Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12374 | 3' | -53.6 | NC_003324.1 | + | 35203 | 0.72 | 0.458894 |
Target: 5'- aGGUCAACGGcGACGGCGCu--GGCGa -3' miRNA: 3'- gCCGGUUGUU-CUGCUGCGucuUCGCg -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 18598 | 0.72 | 0.458894 |
Target: 5'- gGGCCAucuGguGGGCGGCGUGGAAcauGUGCg -3' miRNA: 3'- gCCGGU---UguUCUGCUGCGUCUU---CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 6236 | 0.72 | 0.467943 |
Target: 5'- uCGGgCAGCGcauuccAGGCGGCGCGGGucaguccgcuaucGGCGUa -3' miRNA: 3'- -GCCgGUUGU------UCUGCUGCGUCU-------------UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 23483 | 0.72 | 0.468954 |
Target: 5'- gCGGCCAACGAGAaa--GCc-GAGCGCg -3' miRNA: 3'- -GCCGGUUGUUCUgcugCGucUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 29916 | 0.72 | 0.476062 |
Target: 5'- uGGCCAuGCuGGACGGCGCGGcccacgguccggacGGGCGa -3' miRNA: 3'- gCCGGU-UGuUCUGCUGCGUC--------------UUCGCg -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 45653 | 0.72 | 0.478102 |
Target: 5'- aGGCCGACAaacaugagccccuGGGCaauaGAUGCAGggGCucgGCg -3' miRNA: 3'- gCCGGUUGU-------------UCUG----CUGCGUCuuCG---CG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 34201 | 0.72 | 0.479125 |
Target: 5'- cCGGUCGACAGGGaGGCGU-GAGuGCGCg -3' miRNA: 3'- -GCCGGUUGUUCUgCUGCGuCUU-CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 32181 | 0.72 | 0.499782 |
Target: 5'- uCGGCCucaccGGCGACGagccGAGGCGCa -3' miRNA: 3'- -GCCGGuuguuCUGCUGCgu--CUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 13727 | 0.71 | 0.510258 |
Target: 5'- gCGGCaGGCAcuGGAUGACGCGGGAauacaucauccGCGUg -3' miRNA: 3'- -GCCGgUUGU--UCUGCUGCGUCUU-----------CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 21148 | 0.71 | 0.510258 |
Target: 5'- gCGGCCGACAAGGCaGCGUuugccGGUGUg -3' miRNA: 3'- -GCCGGUUGUUCUGcUGCGucu--UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 39943 | 0.71 | 0.519764 |
Target: 5'- gCGGCCGACAAGAagguCGAgGaCAGccucuacAAGCGUg -3' miRNA: 3'- -GCCGGUUGUUCU----GCUgC-GUC-------UUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 49992 | 0.71 | 0.520825 |
Target: 5'- gGGgCAGCgAAGGCGA-GCAcGAGCGCg -3' miRNA: 3'- gCCgGUUG-UUCUGCUgCGUcUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 32403 | 0.71 | 0.531476 |
Target: 5'- aGGCCAuGCAGGAUccggaGAUGCGGcgccGCGCa -3' miRNA: 3'- gCCGGU-UGUUCUG-----CUGCGUCuu--CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 26286 | 0.71 | 0.531476 |
Target: 5'- -uGCCgAGCGaggGGACGACGCAGAcGCaGCc -3' miRNA: 3'- gcCGG-UUGU---UCUGCUGCGUCUuCG-CG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 40334 | 0.71 | 0.542205 |
Target: 5'- cCGGaCCGcacGCAAGGCGGCagucgaGCGGGAGCcaGCa -3' miRNA: 3'- -GCC-GGU---UGUUCUGCUG------CGUCUUCG--CG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 33058 | 0.71 | 0.542205 |
Target: 5'- uCGGCauuGGCGAcGGCGA-GCAGAugcAGCGCg -3' miRNA: 3'- -GCCGg--UUGUU-CUGCUgCGUCU---UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 30870 | 0.71 | 0.553005 |
Target: 5'- gGGCgagacguucgaCAGCAAGAuggauaCGGCGCAGGAccGCGCc -3' miRNA: 3'- gCCG-----------GUUGUUCU------GCUGCGUCUU--CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 3519 | 0.71 | 0.553005 |
Target: 5'- -cGCCA--AAGACGgugcuuucccACGCGGAAGUGCa -3' miRNA: 3'- gcCGGUugUUCUGC----------UGCGUCUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 45715 | 0.71 | 0.553005 |
Target: 5'- uCGGCCucCAAGACGACGaaccccuGUGCu -3' miRNA: 3'- -GCCGGuuGUUCUGCUGCgucuu--CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 45829 | 0.71 | 0.557343 |
Target: 5'- gGGCUgcGGCGAGAacagugagguggaaaCGGCGCGG-GGCGCc -3' miRNA: 3'- gCCGG--UUGUUCU---------------GCUGCGUCuUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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