miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 12369 0.7 0.573693
Target:  5'- aGGCCAcGCAugcGGACGGuagggcuCGCAGAaauagaucgAGCGCc -3'
miRNA:   3'- gCCGGU-UGU---UCUGCU-------GCGUCU---------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 34907 0.7 0.574786
Target:  5'- uCGGCCGGCAGGAUccACGUugccGGCGCu -3'
miRNA:   3'- -GCCGGUUGUUCUGc-UGCGucu-UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 10693 0.7 0.574786
Target:  5'- aCGGCCAGCGuuGGGCGAC-UGGggGaCGg -3'
miRNA:   3'- -GCCGGUUGU--UCUGCUGcGUCuuC-GCg -5'
12374 3' -53.6 NC_003324.1 + 38178 0.7 0.585753
Target:  5'- aCGGUCAcCAGcACGGCGCcGAcGCGCu -3'
miRNA:   3'- -GCCGGUuGUUcUGCUGCGuCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 30426 0.7 0.585753
Target:  5'- gGGCCAGCugcuCG-CGCGGGAucuGCGCa -3'
miRNA:   3'- gCCGGUUGuucuGCuGCGUCUU---CGCG- -5'
12374 3' -53.6 NC_003324.1 + 20917 0.7 0.595657
Target:  5'- gCGGCCGACAuGGAccCGAC-CGGAAcggcgauGCGCg -3'
miRNA:   3'- -GCCGGUUGU-UCU--GCUGcGUCUU-------CGCG- -5'
12374 3' -53.6 NC_003324.1 + 35715 0.7 0.596759
Target:  5'- aGGCCAaacaGCAgcAGAUGAUGCu---GCGCg -3'
miRNA:   3'- gCCGGU----UGU--UCUGCUGCGucuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 16803 0.7 0.596759
Target:  5'- cCGGCCAGCAGGGUGACgGCA--AGCa- -3'
miRNA:   3'- -GCCGGUUGUUCUGCUG-CGUcuUCGcg -5'
12374 3' -53.6 NC_003324.1 + 16232 0.7 0.607795
Target:  5'- aGGCCGu---GcCGACGCGGccAGCGCa -3'
miRNA:   3'- gCCGGUuguuCuGCUGCGUCu-UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 30446 0.7 0.612216
Target:  5'- uGGCCGA--GGGCGACGCcaucaaggcucugacGGAGGaUGCa -3'
miRNA:   3'- gCCGGUUguUCUGCUGCG---------------UCUUC-GCG- -5'
12374 3' -53.6 NC_003324.1 + 55441 0.69 0.618853
Target:  5'- uGGaCCGACGcauGACGcACGCuGAuuuGGCGCu -3'
miRNA:   3'- gCC-GGUUGUu--CUGC-UGCGuCU---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 22787 0.69 0.628815
Target:  5'- gGGCUgaccuucGACGAGcuCGGCGUGGAuGCGCu -3'
miRNA:   3'- gCCGG-------UUGUUCu-GCUGCGUCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 48818 0.69 0.629922
Target:  5'- uGGCCuGCAGccugcuggcGcCGACGCGGuuGGCGCc -3'
miRNA:   3'- gCCGGuUGUU---------CuGCUGCGUCu-UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 40651 0.69 0.629922
Target:  5'- uCGGgCGACAuGACGACaCGGuAGUGCc -3'
miRNA:   3'- -GCCgGUUGUuCUGCUGcGUCuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 54384 0.69 0.629922
Target:  5'- aCGGaCguGC-AGACGGCGCAGA--CGCa -3'
miRNA:   3'- -GCC-GguUGuUCUGCUGCGUCUucGCG- -5'
12374 3' -53.6 NC_003324.1 + 42380 0.69 0.640993
Target:  5'- cCGGCaCGugGcAGGCGGCGCAcucAGCGUu -3'
miRNA:   3'- -GCCG-GUugU-UCUGCUGCGUcu-UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 9658 0.69 0.640993
Target:  5'- -cGCCAACGcgcuGGGCGGCGUGGGgccgGGCGg -3'
miRNA:   3'- gcCGGUUGU----UCUGCUGCGUCU----UCGCg -5'
12374 3' -53.6 NC_003324.1 + 15016 0.69 0.652056
Target:  5'- aCGGgCA--AAGGCGACGgCAGGucgaucauGGCGCa -3'
miRNA:   3'- -GCCgGUugUUCUGCUGC-GUCU--------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 31237 0.69 0.652056
Target:  5'- aGGCCGggcagcuccGCGAGGCaGGCcuGCAGcgccAGGCGCa -3'
miRNA:   3'- gCCGGU---------UGUUCUG-CUG--CGUC----UUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 40518 0.69 0.652056
Target:  5'- gCGGCacgcaAGCAgaccccaaAGGCGACGaC-GAAGCGCc -3'
miRNA:   3'- -GCCGg----UUGU--------UCUGCUGC-GuCUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.