miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 4618 0.67 0.763954
Target:  5'- -cGCCAACAuGAUGcCGCugaugaucaacggcGAAGCGCa -3'
miRNA:   3'- gcCGGUUGUuCUGCuGCGu-------------CUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 1571 0.67 0.758808
Target:  5'- cCGGCCGgaaGCAaugccauAGACGAagaugGCGGAAauccGCGCc -3'
miRNA:   3'- -GCCGGU---UGU-------UCUGCUg----CGUCUU----CGCG- -5'
12374 3' -53.6 NC_003324.1 + 8555 0.67 0.756741
Target:  5'- cCGGCCAccauCGGGGCGuagucucgauugacGCGCAu--GCGCg -3'
miRNA:   3'- -GCCGGUu---GUUCUGC--------------UGCGUcuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 34004 0.67 0.749465
Target:  5'- uCGGUCGGuuuggaaguCGGGGcCGAUGCAGAAG-GCg -3'
miRNA:   3'- -GCCGGUU---------GUUCU-GCUGCGUCUUCgCG- -5'
12374 3' -53.6 NC_003324.1 + 37232 0.67 0.749465
Target:  5'- aGGaagaCGACAAGcCGGCGgGGAGGaagaGCg -3'
miRNA:   3'- gCCg---GUUGUUCuGCUGCgUCUUCg---CG- -5'
12374 3' -53.6 NC_003324.1 + 27182 0.67 0.749465
Target:  5'- uGGCUAuCGGGA--ACGCGGGuaAGCGCc -3'
miRNA:   3'- gCCGGUuGUUCUgcUGCGUCU--UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 6287 0.67 0.73897
Target:  5'- uCGGCCuuCAuggcuucGACGGuCGCAGcAAGgGCu -3'
miRNA:   3'- -GCCGGuuGUu------CUGCU-GCGUC-UUCgCG- -5'
12374 3' -53.6 NC_003324.1 + 53689 0.67 0.73897
Target:  5'- aCGGCgaAACAGGcgcuggacgcauGCGACGCcuGGAugaagcAGCGCg -3'
miRNA:   3'- -GCCGg-UUGUUC------------UGCUGCG--UCU------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 21189 0.67 0.73897
Target:  5'- aGcGCCAGCccgacguggAAGcCGACGCAGcacGCGCc -3'
miRNA:   3'- gC-CGGUUG---------UUCuGCUGCGUCuu-CGCG- -5'
12374 3' -53.6 NC_003324.1 + 32342 0.67 0.73897
Target:  5'- uGGCgAGCGucccgacACGAC-CGGggGCGCu -3'
miRNA:   3'- gCCGgUUGUuc-----UGCUGcGUCuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 56498 0.67 0.73897
Target:  5'- uGGUCAAacgAGGAUGAgCGCGGcgcuGCGCa -3'
miRNA:   3'- gCCGGUUg--UUCUGCU-GCGUCuu--CGCG- -5'
12374 3' -53.6 NC_003324.1 + 9455 0.67 0.73897
Target:  5'- aCGGUCAAUAAuGGCGAUGCuGGAucGGCccGCu -3'
miRNA:   3'- -GCCGGUUGUU-CUGCUGCG-UCU--UCG--CG- -5'
12374 3' -53.6 NC_003324.1 + 55581 0.67 0.737914
Target:  5'- aGGCCGGCAGGcuccugcccgGCGugGaagaaauggaggaUGGAAGCGUc -3'
miRNA:   3'- gCCGGUUGUUC----------UGCugC-------------GUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 40421 0.67 0.737914
Target:  5'- -aGCCGGCAAGACuGCuGCAGcgccgaaGGGUGCa -3'
miRNA:   3'- gcCGGUUGUUCUGcUG-CGUC-------UUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 3098 0.68 0.728366
Target:  5'- -uGCCAuuCGAGGCGAa-CAGAaAGCGCg -3'
miRNA:   3'- gcCGGUu-GUUCUGCUgcGUCU-UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 49525 0.68 0.728366
Target:  5'- uCGGCCGuaucgagcgGCGAGGCGACGUGcauGGuCGUa -3'
miRNA:   3'- -GCCGGU---------UGUUCUGCUGCGUcu-UC-GCG- -5'
12374 3' -53.6 NC_003324.1 + 23527 0.68 0.728366
Target:  5'- cCGGCaCGAUcGGugccccacaGCGugGCGGcGGGCGCg -3'
miRNA:   3'- -GCCG-GUUGuUC---------UGCugCGUC-UUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 19372 0.68 0.728366
Target:  5'- -cGUCAGCGauGGAuCGACGCcGgcGCGCg -3'
miRNA:   3'- gcCGGUUGU--UCU-GCUGCGuCuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 39758 0.68 0.728366
Target:  5'- gCGGCaCAuCAAGcACGAUGUcgaGGAagagGGCGCg -3'
miRNA:   3'- -GCCG-GUuGUUC-UGCUGCG---UCU----UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 53467 0.68 0.728366
Target:  5'- -cGCCGGCAAGuACacccGCGCGGAAGC-Cg -3'
miRNA:   3'- gcCGGUUGUUC-UGc---UGCGUCUUCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.