Results 41 - 60 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12374 | 3' | -53.6 | NC_003324.1 | + | 4618 | 0.67 | 0.763954 |
Target: 5'- -cGCCAACAuGAUGcCGCugaugaucaacggcGAAGCGCa -3' miRNA: 3'- gcCGGUUGUuCUGCuGCGu-------------CUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 1571 | 0.67 | 0.758808 |
Target: 5'- cCGGCCGgaaGCAaugccauAGACGAagaugGCGGAAauccGCGCc -3' miRNA: 3'- -GCCGGU---UGU-------UCUGCUg----CGUCUU----CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 8555 | 0.67 | 0.756741 |
Target: 5'- cCGGCCAccauCGGGGCGuagucucgauugacGCGCAu--GCGCg -3' miRNA: 3'- -GCCGGUu---GUUCUGC--------------UGCGUcuuCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 37232 | 0.67 | 0.749465 |
Target: 5'- aGGaagaCGACAAGcCGGCGgGGAGGaagaGCg -3' miRNA: 3'- gCCg---GUUGUUCuGCUGCgUCUUCg---CG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 27182 | 0.67 | 0.749465 |
Target: 5'- uGGCUAuCGGGA--ACGCGGGuaAGCGCc -3' miRNA: 3'- gCCGGUuGUUCUgcUGCGUCU--UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 34004 | 0.67 | 0.749465 |
Target: 5'- uCGGUCGGuuuggaaguCGGGGcCGAUGCAGAAG-GCg -3' miRNA: 3'- -GCCGGUU---------GUUCU-GCUGCGUCUUCgCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 21189 | 0.67 | 0.73897 |
Target: 5'- aGcGCCAGCccgacguggAAGcCGACGCAGcacGCGCc -3' miRNA: 3'- gC-CGGUUG---------UUCuGCUGCGUCuu-CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 6287 | 0.67 | 0.73897 |
Target: 5'- uCGGCCuuCAuggcuucGACGGuCGCAGcAAGgGCu -3' miRNA: 3'- -GCCGGuuGUu------CUGCU-GCGUC-UUCgCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 32342 | 0.67 | 0.73897 |
Target: 5'- uGGCgAGCGucccgacACGAC-CGGggGCGCu -3' miRNA: 3'- gCCGgUUGUuc-----UGCUGcGUCuuCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 53689 | 0.67 | 0.73897 |
Target: 5'- aCGGCgaAACAGGcgcuggacgcauGCGACGCcuGGAugaagcAGCGCg -3' miRNA: 3'- -GCCGg-UUGUUC------------UGCUGCG--UCU------UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 56498 | 0.67 | 0.73897 |
Target: 5'- uGGUCAAacgAGGAUGAgCGCGGcgcuGCGCa -3' miRNA: 3'- gCCGGUUg--UUCUGCU-GCGUCuu--CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 9455 | 0.67 | 0.73897 |
Target: 5'- aCGGUCAAUAAuGGCGAUGCuGGAucGGCccGCu -3' miRNA: 3'- -GCCGGUUGUU-CUGCUGCG-UCU--UCG--CG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 55581 | 0.67 | 0.737914 |
Target: 5'- aGGCCGGCAGGcuccugcccgGCGugGaagaaauggaggaUGGAAGCGUc -3' miRNA: 3'- gCCGGUUGUUC----------UGCugC-------------GUCUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 40421 | 0.67 | 0.737914 |
Target: 5'- -aGCCGGCAAGACuGCuGCAGcgccgaaGGGUGCa -3' miRNA: 3'- gcCGGUUGUUCUGcUG-CGUC-------UUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 53467 | 0.68 | 0.728366 |
Target: 5'- -cGCCGGCAAGuACacccGCGCGGAAGC-Cg -3' miRNA: 3'- gcCGGUUGUUC-UGc---UGCGUCUUCGcG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 29977 | 0.68 | 0.728366 |
Target: 5'- uGGCCAGCAGcGCGcCGaAGAucGCGCc -3' miRNA: 3'- gCCGGUUGUUcUGCuGCgUCUu-CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 39758 | 0.68 | 0.728366 |
Target: 5'- gCGGCaCAuCAAGcACGAUGUcgaGGAagagGGCGCg -3' miRNA: 3'- -GCCG-GUuGUUC-UGCUGCG---UCU----UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 31316 | 0.68 | 0.728366 |
Target: 5'- gCGGCCGGCGGcGCuGGCGCuggcGGggGCa- -3' miRNA: 3'- -GCCGGUUGUUcUG-CUGCG----UCuuCGcg -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 19372 | 0.68 | 0.728366 |
Target: 5'- -cGUCAGCGauGGAuCGACGCcGgcGCGCg -3' miRNA: 3'- gcCGGUUGU--UCU-GCUGCGuCuuCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 35832 | 0.68 | 0.728366 |
Target: 5'- aGGCCAuggauauuccACAGcGCGACGagcucguGAAGCGUa -3' miRNA: 3'- gCCGGU----------UGUUcUGCUGCgu-----CUUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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