miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 39810 0.66 0.8095
Target:  5'- aGGCCGcCAuguGGugGcUGCAGAAcCGCa -3'
miRNA:   3'- gCCGGUuGU---UCugCuGCGUCUUcGCG- -5'
12374 3' -53.6 NC_003324.1 + 15963 0.66 0.8095
Target:  5'- aGGCgGggGCGuuGGCGACGauaAGAuGCGCg -3'
miRNA:   3'- gCCGgU--UGUu-CUGCUGCg--UCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 57039 0.66 0.8095
Target:  5'- gGGCUGGgGAG-CGGCGgCGaGGGCGCg -3'
miRNA:   3'- gCCGGUUgUUCuGCUGC-GUcUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 22024 0.66 0.803763
Target:  5'- -cGCCGACGAGAUGGCccgcauccacaagaaGUGGGaagcccAGCGCg -3'
miRNA:   3'- gcCGGUUGUUCUGCUG---------------CGUCU------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 4524 0.66 0.803763
Target:  5'- aGGCCucgaucgacgccaccGACAAGAUGAgcCGCGccguGAucgAGCGCg -3'
miRNA:   3'- gCCGG---------------UUGUUCUGCU--GCGU----CU---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 30063 0.66 0.799901
Target:  5'- cCGGCCG---GGAuCGAUGCGGAcccGGCuGCc -3'
miRNA:   3'- -GCCGGUuguUCU-GCUGCGUCU---UCG-CG- -5'
12374 3' -53.6 NC_003324.1 + 56164 0.66 0.799901
Target:  5'- uGGCCAGCGAGcuccauCGCGGGuuCGCc -3'
miRNA:   3'- gCCGGUUGUUCugcu--GCGUCUucGCG- -5'
12374 3' -53.6 NC_003324.1 + 11054 0.66 0.790124
Target:  5'- aGGCCGACAuaaACGACGguGccguuaacuGUGCc -3'
miRNA:   3'- gCCGGUUGUuc-UGCUGCguCuu-------CGCG- -5'
12374 3' -53.6 NC_003324.1 + 32277 0.67 0.780181
Target:  5'- gGGCCucgAAGAUGccGCGCAcGAcGCGCg -3'
miRNA:   3'- gCCGGuugUUCUGC--UGCGU-CUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 26243 0.67 0.780181
Target:  5'- -cGCCGACAGaAUGAUGCAGGccgccAGCaGCg -3'
miRNA:   3'- gcCGGUUGUUcUGCUGCGUCU-----UCG-CG- -5'
12374 3' -53.6 NC_003324.1 + 43179 0.67 0.780181
Target:  5'- cCGaGCCAGCcucGACGAagGCA-AGGCGCa -3'
miRNA:   3'- -GC-CGGUUGuu-CUGCUg-CGUcUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 41340 0.67 0.780181
Target:  5'- aCGGCCu-CGAaauCGGCGCuGGggGCGg -3'
miRNA:   3'- -GCCGGuuGUUcu-GCUGCG-UCuuCGCg -5'
12374 3' -53.6 NC_003324.1 + 18008 0.67 0.779178
Target:  5'- gCGGCCGGCAc--UGAUGCAGAacgacuuugcgaaGGuCGCg -3'
miRNA:   3'- -GCCGGUUGUucuGCUGCGUCU-------------UC-GCG- -5'
12374 3' -53.6 NC_003324.1 + 24242 0.67 0.779178
Target:  5'- -cGCCAACAAgcggcucuuccguGAUGAuccgacuuggcCGCAGAucAGCGCg -3'
miRNA:   3'- gcCGGUUGUU-------------CUGCU-----------GCGUCU--UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 31649 0.67 0.771099
Target:  5'- gGGCCAcgaaccuuggcauauCGAGAC--CGCGGgcGCGCg -3'
miRNA:   3'- gCCGGUu--------------GUUCUGcuGCGUCuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 4206 0.67 0.770083
Target:  5'- cCGGCUuccgauuCGAGAU--CGguGAGGCGCu -3'
miRNA:   3'- -GCCGGuu-----GUUCUGcuGCguCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 46497 0.67 0.770083
Target:  5'- uCGGCCGgcgaacacuGCAGGACuacCGCA--AGCGCc -3'
miRNA:   3'- -GCCGGU---------UGUUCUGcu-GCGUcuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15376 0.67 0.770083
Target:  5'- -cGCUgaauACGAGcgcaGCGA-GCAGAAGCGCg -3'
miRNA:   3'- gcCGGu---UGUUC----UGCUgCGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 44322 0.67 0.770083
Target:  5'- gCGGCCGAUAgccucugcAGccACGGCGCGcGcuGCGCc -3'
miRNA:   3'- -GCCGGUUGU--------UC--UGCUGCGU-CuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 31608 0.67 0.770083
Target:  5'- gCGGCCAuucucacgACGAGgacggcggacuGCGACcauucaauGCAGAagAGCGCc -3'
miRNA:   3'- -GCCGGU--------UGUUC-----------UGCUG--------CGUCU--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.