miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 15963 0.66 0.8095
Target:  5'- aGGCgGggGCGuuGGCGACGauaAGAuGCGCg -3'
miRNA:   3'- gCCGgU--UGUu-CUGCUGCg--UCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 51713 0.66 0.818911
Target:  5'- aGGauauCAGCGAGGcCGACGCAaucgccGAGgGCGCc -3'
miRNA:   3'- gCCg---GUUGUUCU-GCUGCGU------CUU-CGCG- -5'
12374 3' -53.6 NC_003324.1 + 13860 0.66 0.828124
Target:  5'- uGGCUucguGCGGGAgGGCGUAau-GCGCc -3'
miRNA:   3'- gCCGGu---UGUUCUgCUGCGUcuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 23995 0.66 0.837127
Target:  5'- aCGcGCUggUAGGGCGGCGgUAGGGcugcugcguGCGCu -3'
miRNA:   3'- -GC-CGGuuGUUCUGCUGC-GUCUU---------CGCG- -5'
12374 3' -53.6 NC_003324.1 + 3759 0.66 0.837127
Target:  5'- gCGGuCCAAUGgcAGAUGAUGC-GAAGCa- -3'
miRNA:   3'- -GCC-GGUUGU--UCUGCUGCGuCUUCGcg -5'
12374 3' -53.6 NC_003324.1 + 42701 0.66 0.837127
Target:  5'- uGGCgaGGCAucaucccaucGGACGAUGCGguagacguuguuGAAGCGUg -3'
miRNA:   3'- gCCGg-UUGU----------UCUGCUGCGU------------CUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 31690 0.66 0.837127
Target:  5'- uCGGCCGcauccccguGCuGG-UGACGCgaaccaccAGGAGCGCc -3'
miRNA:   3'- -GCCGGU---------UGuUCuGCUGCG--------UCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 18518 0.66 0.817979
Target:  5'- cCGG-CGGCAAGGuCG-CGCAGAccagaccAGCGUc -3'
miRNA:   3'- -GCCgGUUGUUCU-GCuGCGUCU-------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 27182 0.67 0.749465
Target:  5'- uGGCUAuCGGGA--ACGCGGGuaAGCGCc -3'
miRNA:   3'- gCCGGUuGUUCUgcUGCGUCU--UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 53689 0.67 0.73897
Target:  5'- aCGGCgaAACAGGcgcuggacgcauGCGACGCcuGGAugaagcAGCGCg -3'
miRNA:   3'- -GCCGg-UUGUUC------------UGCUGCG--UCU------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 56498 0.67 0.73897
Target:  5'- uGGUCAAacgAGGAUGAgCGCGGcgcuGCGCa -3'
miRNA:   3'- gCCGGUUg--UUCUGCU-GCGUCuu--CGCG- -5'
12374 3' -53.6 NC_003324.1 + 9455 0.67 0.73897
Target:  5'- aCGGUCAAUAAuGGCGAUGCuGGAucGGCccGCu -3'
miRNA:   3'- -GCCGGUUGUU-CUGCUGCG-UCU--UCG--CG- -5'
12374 3' -53.6 NC_003324.1 + 32277 0.67 0.780181
Target:  5'- gGGCCucgAAGAUGccGCGCAcGAcGCGCg -3'
miRNA:   3'- gCCGGuugUUCUGC--UGCGU-CUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 26243 0.67 0.780181
Target:  5'- -cGCCGACAGaAUGAUGCAGGccgccAGCaGCg -3'
miRNA:   3'- gcCGGUUGUUcUGCUGCGUCU-----UCG-CG- -5'
12374 3' -53.6 NC_003324.1 + 43179 0.67 0.780181
Target:  5'- cCGaGCCAGCcucGACGAagGCA-AGGCGCa -3'
miRNA:   3'- -GC-CGGUUGuu-CUGCUg-CGUcUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 34004 0.67 0.749465
Target:  5'- uCGGUCGGuuuggaaguCGGGGcCGAUGCAGAAG-GCg -3'
miRNA:   3'- -GCCGGUU---------GUUCU-GCUGCGUCUUCgCG- -5'
12374 3' -53.6 NC_003324.1 + 41340 0.67 0.780181
Target:  5'- aCGGCCu-CGAaauCGGCGCuGGggGCGg -3'
miRNA:   3'- -GCCGGuuGUUcu-GCUGCG-UCuuCGCg -5'
12374 3' -53.6 NC_003324.1 + 44322 0.67 0.770083
Target:  5'- gCGGCCGAUAgccucugcAGccACGGCGCGcGcuGCGCc -3'
miRNA:   3'- -GCCGGUUGU--------UC--UGCUGCGU-CuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15376 0.67 0.770083
Target:  5'- -cGCUgaauACGAGcgcaGCGA-GCAGAAGCGCg -3'
miRNA:   3'- gcCGGu---UGUUC----UGCUgCGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 4618 0.67 0.763954
Target:  5'- -cGCCAACAuGAUGcCGCugaugaucaacggcGAAGCGCa -3'
miRNA:   3'- gcCGGUUGUuCUGCuGCGu-------------CUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.