miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 35203 0.72 0.458894
Target:  5'- aGGUCAACGGcGACGGCGCu--GGCGa -3'
miRNA:   3'- gCCGGUUGUU-CUGCUGCGucuUCGCg -5'
12374 3' -53.6 NC_003324.1 + 15582 0.72 0.448952
Target:  5'- gGGCCGACAcggcAGAUGccaAgGCGGGAGCGa -3'
miRNA:   3'- gCCGGUUGU----UCUGC---UgCGUCUUCGCg -5'
12374 3' -53.6 NC_003324.1 + 17162 0.72 0.458894
Target:  5'- uGGcCCAGCGAuuGACGAgGCGcuGGCGCg -3'
miRNA:   3'- gCC-GGUUGUU--CUGCUgCGUcuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 18598 0.72 0.458894
Target:  5'- gGGCCAucuGguGGGCGGCGUGGAAcauGUGCg -3'
miRNA:   3'- gCCGGU---UguUCUGCUGCGUCUU---CGCG- -5'
12374 3' -53.6 NC_003324.1 + 24289 0.72 0.458894
Target:  5'- gGGCaCGGCGgagcuuggcgaAGGCGuCGCGGAcGCGCa -3'
miRNA:   3'- gCCG-GUUGU-----------UCUGCuGCGUCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 45653 0.72 0.478102
Target:  5'- aGGCCGACAaacaugagccccuGGGCaauaGAUGCAGggGCucgGCg -3'
miRNA:   3'- gCCGGUUGU-------------UCUG----CUGCGUCuuCG---CG- -5'
12374 3' -53.6 NC_003324.1 + 29999 0.72 0.458894
Target:  5'- cCGGCCGguGCAcucuGGCGACGC-GAugcuGCGCc -3'
miRNA:   3'- -GCCGGU--UGUu---CUGCUGCGuCUu---CGCG- -5'
12374 3' -53.6 NC_003324.1 + 29916 0.72 0.476062
Target:  5'- uGGCCAuGCuGGACGGCGCGGcccacgguccggacGGGCGa -3'
miRNA:   3'- gCCGGU-UGuUCUGCUGCGUC--------------UUCGCg -5'
12374 3' -53.6 NC_003324.1 + 45715 0.71 0.553005
Target:  5'- uCGGCCucCAAGACGACGaaccccuGUGCu -3'
miRNA:   3'- -GCCGGuuGUUCUGCUGCgucuu--CGCG- -5'
12374 3' -53.6 NC_003324.1 + 3519 0.71 0.553005
Target:  5'- -cGCCA--AAGACGgugcuuucccACGCGGAAGUGCa -3'
miRNA:   3'- gcCGGUugUUCUGC----------UGCGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 40334 0.71 0.542205
Target:  5'- cCGGaCCGcacGCAAGGCGGCagucgaGCGGGAGCcaGCa -3'
miRNA:   3'- -GCC-GGU---UGUUCUGCUG------CGUCUUCG--CG- -5'
12374 3' -53.6 NC_003324.1 + 33058 0.71 0.542205
Target:  5'- uCGGCauuGGCGAcGGCGA-GCAGAugcAGCGCg -3'
miRNA:   3'- -GCCGg--UUGUU-CUGCUgCGUCU---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 45829 0.71 0.557343
Target:  5'- gGGCUgcGGCGAGAacagugagguggaaaCGGCGCGG-GGCGCc -3'
miRNA:   3'- gCCGG--UUGUUCU---------------GCUGCGUCuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 30870 0.71 0.553005
Target:  5'- gGGCgagacguucgaCAGCAAGAuggauaCGGCGCAGGAccGCGCc -3'
miRNA:   3'- gCCG-----------GUUGUUCU------GCUGCGUCUU--CGCG- -5'
12374 3' -53.6 NC_003324.1 + 39943 0.71 0.519764
Target:  5'- gCGGCCGACAAGAagguCGAgGaCAGccucuacAAGCGUg -3'
miRNA:   3'- -GCCGGUUGUUCU----GCUgC-GUC-------UUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 26286 0.71 0.531476
Target:  5'- -uGCCgAGCGaggGGACGACGCAGAcGCaGCc -3'
miRNA:   3'- gcCGG-UUGU---UCUGCUGCGUCUuCG-CG- -5'
12374 3' -53.6 NC_003324.1 + 13727 0.71 0.510258
Target:  5'- gCGGCaGGCAcuGGAUGACGCGGGAauacaucauccGCGUg -3'
miRNA:   3'- -GCCGgUUGU--UCUGCUGCGUCUU-----------CGCG- -5'
12374 3' -53.6 NC_003324.1 + 21148 0.71 0.510258
Target:  5'- gCGGCCGACAAGGCaGCGUuugccGGUGUg -3'
miRNA:   3'- -GCCGGUUGUUCUGcUGCGucu--UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 32403 0.71 0.531476
Target:  5'- aGGCCAuGCAGGAUccggaGAUGCGGcgccGCGCa -3'
miRNA:   3'- gCCGGU-UGUUCUG-----CUGCGUCuu--CGCG- -5'
12374 3' -53.6 NC_003324.1 + 49992 0.71 0.520825
Target:  5'- gGGgCAGCgAAGGCGA-GCAcGAGCGCg -3'
miRNA:   3'- gCCgGUUG-UUCUGCUgCGUcUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.