miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 30426 0.7 0.585753
Target:  5'- gGGCCAGCugcuCG-CGCGGGAucuGCGCa -3'
miRNA:   3'- gCCGGUUGuucuGCuGCGUCUU---CGCG- -5'
12374 3' -53.6 NC_003324.1 + 18598 0.72 0.458894
Target:  5'- gGGCCAucuGguGGGCGGCGUGGAAcauGUGCg -3'
miRNA:   3'- gCCGGU---UguUCUGCUGCGUCUU---CGCG- -5'
12374 3' -53.6 NC_003324.1 + 24289 0.72 0.458894
Target:  5'- gGGCaCGGCGgagcuuggcgaAGGCGuCGCGGAcGCGCa -3'
miRNA:   3'- gCCG-GUUGU-----------UCUGCuGCGUCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 29999 0.72 0.458894
Target:  5'- cCGGCCGguGCAcucuGGCGACGC-GAugcuGCGCc -3'
miRNA:   3'- -GCCGGU--UGUu---CUGCUGCGuCUu---CGCG- -5'
12374 3' -53.6 NC_003324.1 + 29916 0.72 0.476062
Target:  5'- uGGCCAuGCuGGACGGCGCGGcccacgguccggacGGGCGa -3'
miRNA:   3'- gCCGGU-UGuUCUGCUGCGUC--------------UUCGCg -5'
12374 3' -53.6 NC_003324.1 + 45653 0.72 0.478102
Target:  5'- aGGCCGACAaacaugagccccuGGGCaauaGAUGCAGggGCucgGCg -3'
miRNA:   3'- gCCGGUUGU-------------UCUG----CUGCGUCuuCG---CG- -5'
12374 3' -53.6 NC_003324.1 + 13727 0.71 0.510258
Target:  5'- gCGGCaGGCAcuGGAUGACGCGGGAauacaucauccGCGUg -3'
miRNA:   3'- -GCCGgUUGU--UCUGCUGCGUCUU-----------CGCG- -5'
12374 3' -53.6 NC_003324.1 + 45829 0.71 0.557343
Target:  5'- gGGCUgcGGCGAGAacagugagguggaaaCGGCGCGG-GGCGCc -3'
miRNA:   3'- gCCGG--UUGUUCU---------------GCUGCGUCuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 34907 0.7 0.574786
Target:  5'- uCGGCCGGCAGGAUccACGUugccGGCGCu -3'
miRNA:   3'- -GCCGGUUGUUCUGc-UGCGucu-UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 17162 0.72 0.458894
Target:  5'- uGGcCCAGCGAuuGACGAgGCGcuGGCGCg -3'
miRNA:   3'- gCC-GGUUGUU--CUGCUgCGUcuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15582 0.72 0.448952
Target:  5'- gGGCCGACAcggcAGAUGccaAgGCGGGAGCGa -3'
miRNA:   3'- gCCGGUUGU----UCUGC---UgCGUCUUCGCg -5'
12374 3' -53.6 NC_003324.1 + 6216 0.73 0.42943
Target:  5'- -aGCCAugAAGGCcgaGGCGCAGcagcAGCGCa -3'
miRNA:   3'- gcCGGUugUUCUG---CUGCGUCu---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 1514 0.79 0.187656
Target:  5'- gGGCCAGCGAGGaucCGGCgGCAGuGGUGCg -3'
miRNA:   3'- gCCGGUUGUUCU---GCUG-CGUCuUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 37995 0.77 0.263928
Target:  5'- gCGGCCAugccggaGCGGuuGCGGCGCAcGggGCGCg -3'
miRNA:   3'- -GCCGGU-------UGUUc-UGCUGCGU-CuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 36695 0.75 0.315749
Target:  5'- cCGGaaCCAACAuucGAUGAUGCGGAuGCGCu -3'
miRNA:   3'- -GCC--GGUUGUu--CUGCUGCGUCUuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 36544 0.74 0.374005
Target:  5'- aGGUgAAUAGGGCGACGUAcauGCGCa -3'
miRNA:   3'- gCCGgUUGUUCUGCUGCGUcuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 7552 0.74 0.382901
Target:  5'- gGGCCAGCAAGGCGcACGCcuccggaccagaGGGAGUu- -3'
miRNA:   3'- gCCGGUUGUUCUGC-UGCG------------UCUUCGcg -5'
12374 3' -53.6 NC_003324.1 + 14319 0.74 0.383798
Target:  5'- aCGGCagugaagcacgucagAGCGAGGCaGCuGCAGAAGCGCg -3'
miRNA:   3'- -GCCGg--------------UUGUUCUGcUG-CGUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 14577 0.73 0.401109
Target:  5'- gCGGCCugccggcGCAAGcggccgGCGGCGCAGGcgguAGCGUg -3'
miRNA:   3'- -GCCGGu------UGUUC------UGCUGCGUCU----UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 26709 0.73 0.419858
Target:  5'- cCGGaCAGCuu-GCGACGCAGcaGGGCGCg -3'
miRNA:   3'- -GCCgGUUGuucUGCUGCGUC--UUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.