miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12375 5' -53 NC_003324.1 + 8282 0.66 0.874625
Target:  5'- uCCguagUCGUCGCCGUCG-CAGccAGCGUCa -3'
miRNA:   3'- -GGa---GGCGGUGGCAGCaGUUc-UUGUAG- -5'
12375 5' -53 NC_003324.1 + 44140 0.66 0.869889
Target:  5'- cCCUuuGCCucGCCGuacacauccuugaugUCGUCGGcGAugGUCu -3'
miRNA:   3'- -GGAggCGG--UGGC---------------AGCAGUU-CUugUAG- -5'
12375 5' -53 NC_003324.1 + 34407 0.66 0.866682
Target:  5'- aCU-CGCCGCCGUCcUCG---GCAUCg -3'
miRNA:   3'- gGAgGCGGUGGCAGcAGUucuUGUAG- -5'
12375 5' -53 NC_003324.1 + 6904 0.66 0.841405
Target:  5'- cUCUUCGCCACCGcggUCGguaUCAAGGuucaGUCc -3'
miRNA:   3'- -GGAGGCGGUGGC---AGC---AGUUCUug--UAG- -5'
12375 5' -53 NC_003324.1 + 35106 0.67 0.823433
Target:  5'- -aUCUGCCuuuCCGUCGUCGccAGcgcCGUCg -3'
miRNA:   3'- ggAGGCGGu--GGCAGCAGU--UCuu-GUAG- -5'
12375 5' -53 NC_003324.1 + 12883 0.67 0.823433
Target:  5'- aCUUCGCCAUCGUCGaUggGcGCGg- -3'
miRNA:   3'- gGAGGCGGUGGCAGCaGuuCuUGUag -5'
12375 5' -53 NC_003324.1 + 52195 0.67 0.823433
Target:  5'- gCCUUCGCCgACC-UCGUCAAaauaauCGUCg -3'
miRNA:   3'- -GGAGGCGG-UGGcAGCAGUUcuu---GUAG- -5'
12375 5' -53 NC_003324.1 + 35572 0.67 0.814138
Target:  5'- gCCUgCGCCugCGUCuUCu-GcGCAUCg -3'
miRNA:   3'- -GGAgGCGGugGCAGcAGuuCuUGUAG- -5'
12375 5' -53 NC_003324.1 + 1478 0.67 0.794981
Target:  5'- uUUCCGCCAUCuUCGUCuauGGCAUUg -3'
miRNA:   3'- gGAGGCGGUGGcAGCAGuucUUGUAG- -5'
12375 5' -53 NC_003324.1 + 39422 0.67 0.794981
Target:  5'- aCUgUGUCACCGUucuUGUCGAGGAUGUa -3'
miRNA:   3'- gGAgGCGGUGGCA---GCAGUUCUUGUAg -5'
12375 5' -53 NC_003324.1 + 24076 0.67 0.785141
Target:  5'- cCCUaCCGCCGCCcuaccagcgCGUCGAGcGCGa- -3'
miRNA:   3'- -GGA-GGCGGUGGca-------GCAGUUCuUGUag -5'
12375 5' -53 NC_003324.1 + 50382 0.68 0.77514
Target:  5'- --gCCGUCGCCGUUGUCccGGGCcgCg -3'
miRNA:   3'- ggaGGCGGUGGCAGCAGuuCUUGuaG- -5'
12375 5' -53 NC_003324.1 + 56023 0.68 0.764989
Target:  5'- ----aGCgCGCCGUgGUCAAGAAgAUCg -3'
miRNA:   3'- ggaggCG-GUGGCAgCAGUUCUUgUAG- -5'
12375 5' -53 NC_003324.1 + 44383 0.68 0.744288
Target:  5'- gCCg-CGCCACCGcgcccgguUCGUCGAGAcAgAUCg -3'
miRNA:   3'- -GGagGCGGUGGC--------AGCAGUUCU-UgUAG- -5'
12375 5' -53 NC_003324.1 + 34055 0.68 0.744288
Target:  5'- gCUCCGCCuuuCCGUCGggCGGGuGCu-- -3'
miRNA:   3'- gGAGGCGGu--GGCAGCa-GUUCuUGuag -5'
12375 5' -53 NC_003324.1 + 25368 0.69 0.723129
Target:  5'- aCCUCCGCaga-GaUCGUCAaggcugcauGGGACAUCg -3'
miRNA:   3'- -GGAGGCGguggC-AGCAGU---------UCUUGUAG- -5'
12375 5' -53 NC_003324.1 + 19909 0.69 0.712407
Target:  5'- -aUUCGCCGCCGU-GUCAAucACAUUa -3'
miRNA:   3'- ggAGGCGGUGGCAgCAGUUcuUGUAG- -5'
12375 5' -53 NC_003324.1 + 34823 0.69 0.701606
Target:  5'- uCCUUCGCCugcagcucGCCGUCGUCGAacuGC-UCu -3'
miRNA:   3'- -GGAGGCGG--------UGGCAGCAGUUcu-UGuAG- -5'
12375 5' -53 NC_003324.1 + 10090 0.69 0.690736
Target:  5'- uUUCgGCCGCCGUCGUUAuc--CGUCc -3'
miRNA:   3'- gGAGgCGGUGGCAGCAGUucuuGUAG- -5'
12375 5' -53 NC_003324.1 + 21815 0.69 0.67981
Target:  5'- uUUCuCGUCGCCGUCGUCcgccuucuGCAUCa -3'
miRNA:   3'- gGAG-GCGGUGGCAGCAGuucu----UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.