miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 3' -57.9 NC_003324.1 + 29970 0.66 0.601675
Target:  5'- uAGCGGCGGCagccggguccgcaucGAUCccGGCCGgUGCacucugGCg -3'
miRNA:   3'- -UCGCUGCUG---------------CUAGu-CCGGCgACGa-----CG- -5'
12376 3' -57.9 NC_003324.1 + 18238 0.66 0.597369
Target:  5'- cGGCGGucagguugccauCGACGA-CAGaGCCGCgaccGCUGa -3'
miRNA:   3'- -UCGCU------------GCUGCUaGUC-CGGCGa---CGACg -5'
12376 3' -57.9 NC_003324.1 + 30062 0.66 0.596293
Target:  5'- -aCGcCGcCGGUCGcgacaccGGCCGCUGCgGCu -3'
miRNA:   3'- ucGCuGCuGCUAGU-------CCGGCGACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 5350 0.66 0.586623
Target:  5'- uAGCGAgauCGAgGAuaUCGccuGCCGCUGgUGCg -3'
miRNA:   3'- -UCGCU---GCUgCU--AGUc--CGGCGACgACG- -5'
12376 3' -57.9 NC_003324.1 + 1232 0.66 0.554637
Target:  5'- aAGCGAuCGGCaaacagCAGGCCGCUGa--- -3'
miRNA:   3'- -UCGCU-GCUGcua---GUCCGGCGACgacg -5'
12376 3' -57.9 NC_003324.1 + 12540 0.66 0.554637
Target:  5'- aGGCGACGGuuCGAUCAGGCUGgUuacggaacaGCUu- -3'
miRNA:   3'- -UCGCUGCU--GCUAGUCCGGCgA---------CGAcg -5'
12376 3' -57.9 NC_003324.1 + 35795 0.66 0.553579
Target:  5'- uGGCGAUGGCGAUCuGGggguugaCCGgaGCcaGCu -3'
miRNA:   3'- -UCGCUGCUGCUAGuCC-------GGCgaCGa-CG- -5'
12376 3' -57.9 NC_003324.1 + 27060 0.67 0.544084
Target:  5'- cGCGACGcgGCGuuaccguUguGGCCGgUGCgGCu -3'
miRNA:   3'- uCGCUGC--UGCu------AguCCGGCgACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 8407 0.67 0.544084
Target:  5'- cGUGAUG-CgGGUCAGGgauuuCCGCcgGCUGCa -3'
miRNA:   3'- uCGCUGCuG-CUAGUCC-----GGCGa-CGACG- -5'
12376 3' -57.9 NC_003324.1 + 28541 0.67 0.533597
Target:  5'- cGUGACGugGAacaAGGCCgGCaacgGCUGg -3'
miRNA:   3'- uCGCUGCugCUag-UCCGG-CGa---CGACg -5'
12376 3' -57.9 NC_003324.1 + 17136 0.67 0.533597
Target:  5'- cGGUGugG-CGAUCacgaAGGagaCGCUGCaGCg -3'
miRNA:   3'- -UCGCugCuGCUAG----UCCg--GCGACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 29738 0.67 0.51182
Target:  5'- --aGACGGCGGacucgaucccggcUCAGGCgGCggcGUUGCg -3'
miRNA:   3'- ucgCUGCUGCU-------------AGUCCGgCGa--CGACG- -5'
12376 3' -57.9 NC_003324.1 + 38436 0.67 0.502599
Target:  5'- -aCGACGGCGAcCAGcGCCGCcccGgUGCc -3'
miRNA:   3'- ucGCUGCUGCUaGUC-CGGCGa--CgACG- -5'
12376 3' -57.9 NC_003324.1 + 42742 0.67 0.502599
Target:  5'- uGGUGGCccGGCGAau-GGCCuuGCUGUUGCa -3'
miRNA:   3'- -UCGCUG--CUGCUaguCCGG--CGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 35464 0.67 0.492439
Target:  5'- cGCgGGCGGcCGAgCAGGCUGCaGCaGCa -3'
miRNA:   3'- uCG-CUGCU-GCUaGUCCGGCGaCGaCG- -5'
12376 3' -57.9 NC_003324.1 + 9002 0.68 0.486389
Target:  5'- uGuCGACGAgGGUCAGcggaaaccaaucacuGCCGCccGCUGUg -3'
miRNA:   3'- uC-GCUGCUgCUAGUC---------------CGGCGa-CGACG- -5'
12376 3' -57.9 NC_003324.1 + 16420 0.68 0.472412
Target:  5'- cGCGAuCGACGGcaacgccgUCGcGGaCCGCUGCgucUGCu -3'
miRNA:   3'- uCGCU-GCUGCU--------AGU-CC-GGCGACG---ACG- -5'
12376 3' -57.9 NC_003324.1 + 14592 0.68 0.452804
Target:  5'- aAGCGGCcGGCGGcgCAGGCgGUaGCgugGCg -3'
miRNA:   3'- -UCGCUG-CUGCUa-GUCCGgCGaCGa--CG- -5'
12376 3' -57.9 NC_003324.1 + 35030 0.68 0.442211
Target:  5'- cAGCGGCGGCGG-CAGcagcggccugaucGUCGUcGCUGCc -3'
miRNA:   3'- -UCGCUGCUGCUaGUC-------------CGGCGaCGACG- -5'
12376 3' -57.9 NC_003324.1 + 13512 0.68 0.441255
Target:  5'- cGCGGCGGCGGugcacuggacaccUCAgucgccuguaucuGGCCGa-GCUGCa -3'
miRNA:   3'- uCGCUGCUGCU-------------AGU-------------CCGGCgaCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.