miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 3' -57.9 NC_003324.1 + 52658 0.7 0.362023
Target:  5'- gAGCGuCGGCGAUguugacggugaUAGGCUGUcucaugcuugUGCUGCc -3'
miRNA:   3'- -UCGCuGCUGCUA-----------GUCCGGCG----------ACGACG- -5'
12376 3' -57.9 NC_003324.1 + 5350 0.66 0.586623
Target:  5'- uAGCGAgauCGAgGAuaUCGccuGCCGCUGgUGCg -3'
miRNA:   3'- -UCGCU---GCUgCU--AGUc--CGGCGACgACG- -5'
12376 3' -57.9 NC_003324.1 + 17136 0.67 0.533597
Target:  5'- cGGUGugG-CGAUCacgaAGGagaCGCUGCaGCg -3'
miRNA:   3'- -UCGCugCuGCUAG----UCCg--GCGACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 13512 0.68 0.441255
Target:  5'- cGCGGCGGCGGugcacuggacaccUCAgucgccuguaucuGGCCGa-GCUGCa -3'
miRNA:   3'- uCGCUGCUGCU-------------AGU-------------CCGGCgaCGACG- -5'
12376 3' -57.9 NC_003324.1 + 32382 0.68 0.433648
Target:  5'- uGCGGCGcCGcgCagAGGCCGUUGUcGCc -3'
miRNA:   3'- uCGCUGCuGCuaG--UCCGGCGACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 28541 0.67 0.533597
Target:  5'- cGUGACGugGAacaAGGCCgGCaacgGCUGg -3'
miRNA:   3'- uCGCUGCugCUag-UCCGG-CGa---CGACg -5'
12376 3' -57.9 NC_003324.1 + 35464 0.67 0.492439
Target:  5'- cGCgGGCGGcCGAgCAGGCUGCaGCaGCa -3'
miRNA:   3'- uCG-CUGCU-GCUaGUCCGGCGaCGaCG- -5'
12376 3' -57.9 NC_003324.1 + 16420 0.68 0.472412
Target:  5'- cGCGAuCGACGGcaacgccgUCGcGGaCCGCUGCgucUGCu -3'
miRNA:   3'- uCGCU-GCUGCU--------AGU-CC-GGCGACG---ACG- -5'
12376 3' -57.9 NC_003324.1 + 39668 0.7 0.370515
Target:  5'- uGuCGAgGACGAUCcggAGGCUGgUGCUGa -3'
miRNA:   3'- uC-GCUgCUGCUAG---UCCGGCgACGACg -5'
12376 3' -57.9 NC_003324.1 + 13164 0.73 0.215346
Target:  5'- cGuCGGCGGCGGUCGgcGGCgGCgguaccgGCUGCa -3'
miRNA:   3'- uC-GCUGCUGCUAGU--CCGgCGa------CGACG- -5'
12376 3' -57.9 NC_003324.1 + 35124 1.1 0.000464
Target:  5'- cAGCGACGACGAUCAGGCCGCUGCUGCc -3'
miRNA:   3'- -UCGCUGCUGCUAGUCCGGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 38436 0.67 0.502599
Target:  5'- -aCGACGGCGAcCAGcGCCGCcccGgUGCc -3'
miRNA:   3'- ucGCUGCUGCUaGUC-CGGCGa--CgACG- -5'
12376 3' -57.9 NC_003324.1 + 29738 0.67 0.51182
Target:  5'- --aGACGGCGGacucgaucccggcUCAGGCgGCggcGUUGCg -3'
miRNA:   3'- ucgCUGCUGCU-------------AGUCCGgCGa--CGACG- -5'
12376 3' -57.9 NC_003324.1 + 40936 0.69 0.379143
Target:  5'- cGCGGgGGCaGAUCAGcaaucaCCGCUGCgagGCg -3'
miRNA:   3'- uCGCUgCUG-CUAGUCc-----GGCGACGa--CG- -5'
12376 3' -57.9 NC_003324.1 + 29650 0.7 0.370515
Target:  5'- gAGCGACGAgGccuUgAGGCCGCUugaGCcccgUGCa -3'
miRNA:   3'- -UCGCUGCUgCu--AgUCCGGCGA---CG----ACG- -5'
12376 3' -57.9 NC_003324.1 + 42742 0.67 0.502599
Target:  5'- uGGUGGCccGGCGAau-GGCCuuGCUGUUGCa -3'
miRNA:   3'- -UCGCUG--CUGCUaguCCGG--CGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 26319 0.73 0.232685
Target:  5'- cGUGGCaGAUGGUCAGGgagaccuacUUGCUGCUGCc -3'
miRNA:   3'- uCGCUG-CUGCUAGUCC---------GGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 32911 0.8 0.080766
Target:  5'- cAGUGGCGAUGAUCgAGGCgGCUGCccgccaUGCg -3'
miRNA:   3'- -UCGCUGCUGCUAG-UCCGgCGACG------ACG- -5'
12376 3' -57.9 NC_003324.1 + 9002 0.68 0.486389
Target:  5'- uGuCGACGAgGGUCAGcggaaaccaaucacuGCCGCccGCUGUg -3'
miRNA:   3'- uC-GCUGCUgCUAGUC---------------CGGCGa-CGACG- -5'
12376 3' -57.9 NC_003324.1 + 10681 0.69 0.379143
Target:  5'- gGGCGACuggggGACGGUU--GCCGUUGcCUGCa -3'
miRNA:   3'- -UCGCUG-----CUGCUAGucCGGCGAC-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.