miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 5' -53.5 NC_003324.1 + 30741 0.67 0.712471
Target:  5'- cCUGCUGCU-CGGgAGU-GACGgAAGCa -3'
miRNA:   3'- -GACGACGAcGCCgUCGuUUGCgUUUG- -5'
12376 5' -53.5 NC_003324.1 + 32492 0.67 0.701342
Target:  5'- gUGCUGgUGUGcGCGGUaaGAGCGCGc-- -3'
miRNA:   3'- gACGACgACGC-CGUCG--UUUGCGUuug -5'
12376 5' -53.5 NC_003324.1 + 21377 0.67 0.701342
Target:  5'- -cGCcgGCga-GGCGGCGAACGCGGc- -3'
miRNA:   3'- gaCGa-CGacgCCGUCGUUUGCGUUug -5'
12376 5' -53.5 NC_003324.1 + 14377 0.67 0.701342
Target:  5'- -gGCUGCUGCcaaucaacGcGCcGCAAccgagcGCGCAAACg -3'
miRNA:   3'- gaCGACGACG--------C-CGuCGUU------UGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 40328 0.67 0.690141
Target:  5'- -cGCacGCaagGCGGCAGuCGAGCGgGAGCc -3'
miRNA:   3'- gaCGa-CGa--CGCCGUC-GUUUGCgUUUG- -5'
12376 5' -53.5 NC_003324.1 + 55393 0.67 0.690141
Target:  5'- -aGCcGCUGUGGCAGCuuguuccaGCAGccGCg -3'
miRNA:   3'- gaCGaCGACGCCGUCGuuug----CGUU--UG- -5'
12376 5' -53.5 NC_003324.1 + 8203 0.67 0.690141
Target:  5'- -aGCUGCccgGCGGgugaguuuCAGCAcaGGCGCAAcgGCg -3'
miRNA:   3'- gaCGACGa--CGCC--------GUCGU--UUGCGUU--UG- -5'
12376 5' -53.5 NC_003324.1 + 22292 0.67 0.690141
Target:  5'- -aGgUGC-GCGGCGGCAAGCcCAccAACa -3'
miRNA:   3'- gaCgACGaCGCCGUCGUUUGcGU--UUG- -5'
12376 5' -53.5 NC_003324.1 + 38008 0.67 0.690141
Target:  5'- -aGCgGUUGCGGC-GCAcggGGCGCGucAACa -3'
miRNA:   3'- gaCGaCGACGCCGuCGU---UUGCGU--UUG- -5'
12376 5' -53.5 NC_003324.1 + 35012 0.67 0.67888
Target:  5'- uUGCUGCcGCaGCAGCAgcAGCGgCGgcGGCa -3'
miRNA:   3'- gACGACGaCGcCGUCGU--UUGC-GU--UUG- -5'
12376 5' -53.5 NC_003324.1 + 6301 0.68 0.667572
Target:  5'- gCUGCUGCUGCGccuCGGCcuucAugGCuucGACg -3'
miRNA:   3'- -GACGACGACGCc--GUCGu---UugCGu--UUG- -5'
12376 5' -53.5 NC_003324.1 + 44925 0.68 0.656228
Target:  5'- -gGCUGCccaCGGCAGCAGcgggcACGCcaauGACg -3'
miRNA:   3'- gaCGACGac-GCCGUCGUU-----UGCGu---UUG- -5'
12376 5' -53.5 NC_003324.1 + 35329 0.68 0.656228
Target:  5'- -gGCUGCUGCGGUuGCuguUGCu-GCg -3'
miRNA:   3'- gaCGACGACGCCGuCGuuuGCGuuUG- -5'
12376 5' -53.5 NC_003324.1 + 44809 0.68 0.644861
Target:  5'- aUGCUGCUGCggggagaagggGGCGGCGucauuGGCGUg--- -3'
miRNA:   3'- gACGACGACG-----------CCGUCGU-----UUGCGuuug -5'
12376 5' -53.5 NC_003324.1 + 19007 0.68 0.610727
Target:  5'- -gGCUGCacGCGGCuGGCcucGAACGCGAuGCg -3'
miRNA:   3'- gaCGACGa-CGCCG-UCG---UUUGCGUU-UG- -5'
12376 5' -53.5 NC_003324.1 + 1022 0.69 0.57677
Target:  5'- -aGCUcGCUGaCGGCGGCGGGCuCAAu- -3'
miRNA:   3'- gaCGA-CGAC-GCCGUCGUUUGcGUUug -5'
12376 5' -53.5 NC_003324.1 + 51545 0.69 0.565536
Target:  5'- -gGCUGCcgucuUGCGGCaacGGCGuuCGCAAGg -3'
miRNA:   3'- gaCGACG-----ACGCCG---UCGUuuGCGUUUg -5'
12376 5' -53.5 NC_003324.1 + 13169 0.69 0.565536
Target:  5'- -gGCUGCgucgGCGGCGGUcgGCGgcGGCg -3'
miRNA:   3'- gaCGACGa---CGCCGUCGuuUGCguUUG- -5'
12376 5' -53.5 NC_003324.1 + 52420 0.69 0.55436
Target:  5'- gUGCUGCgUGCaauucGguGCAGAUGUAGACc -3'
miRNA:   3'- gACGACG-ACGc----CguCGUUUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 33763 0.7 0.532214
Target:  5'- cCUGUgaUGCcuugGCGGCAGCGcaGGCGUaucGAGCg -3'
miRNA:   3'- -GACG--ACGa---CGCCGUCGU--UUGCG---UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.