Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12377 | 3' | -59.5 | NC_003324.1 | + | 41550 | 0.66 | 0.513061 |
Target: 5'- cGCUaacGaCAGCGGCGCGGGCCuGuuccuCgCAGGu -3' miRNA: 3'- cCGA---C-GUCGUCGUGUCCGG-Cu----G-GUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 38010 | 0.66 | 0.513061 |
Target: 5'- cGGUUGCGGC-GCACGGGgCGcgucaacauuccGCCGa- -3' miRNA: 3'- -CCGACGUCGuCGUGUCCgGC------------UGGUcc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 15456 | 0.66 | 0.513061 |
Target: 5'- aGGUUGcCAGgGGCG-AGGCCaaGGCCgAGGa -3' miRNA: 3'- -CCGAC-GUCgUCGUgUCCGG--CUGG-UCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 48818 | 0.66 | 0.502887 |
Target: 5'- uGGcCUGCAGCcuGCugGcGCCGACgCGGu -3' miRNA: 3'- -CC-GACGUCGu-CGugUcCGGCUG-GUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 13605 | 0.66 | 0.502887 |
Target: 5'- cGGCUGCAaauuccGCGaagacGCGCAGGC-GAUCGGc -3' miRNA: 3'- -CCGACGU------CGU-----CGUGUCCGgCUGGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 26457 | 0.66 | 0.492803 |
Target: 5'- -aCUGgaAGCAGCACcuGCCGAaCAGGu -3' miRNA: 3'- ccGACg-UCGUCGUGucCGGCUgGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 8203 | 0.66 | 0.491799 |
Target: 5'- aGCUGCccGGCgggugaguuucAGCACAGGCgcaacggCGACCGuGGc -3' miRNA: 3'- cCGACG--UCG-----------UCGUGUCCG-------GCUGGU-CC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 129 | 0.66 | 0.476865 |
Target: 5'- uGGCUGCGGCAgGCagACGGGUcauacuucugCGAgguugggacugagcaCCAGGu -3' miRNA: 3'- -CCGACGUCGU-CG--UGUCCG----------GCU---------------GGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 31315 | 0.66 | 0.47292 |
Target: 5'- cGGC--CGGCGGCGCuGGcGCUGGCgGGGg -3' miRNA: 3'- -CCGacGUCGUCGUG-UC-CGGCUGgUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 13401 | 0.66 | 0.47292 |
Target: 5'- uGCUGCAGCucGGCcagauACAGG-CGACUgAGGu -3' miRNA: 3'- cCGACGUCG--UCG-----UGUCCgGCUGG-UCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 19614 | 0.66 | 0.47292 |
Target: 5'- uGGUuuUG-AGCAGCGCGGGCUG--CAGGu -3' miRNA: 3'- -CCG--ACgUCGUCGUGUCCGGCugGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 8432 | 0.66 | 0.47292 |
Target: 5'- cGGCUGCAGguGC--AGGCgGAUUugcGGc -3' miRNA: 3'- -CCGACGUCguCGugUCCGgCUGGu--CC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 44310 | 0.66 | 0.47292 |
Target: 5'- gGGC-GCGGUGGCGC-GGCCGAUa--- -3' miRNA: 3'- -CCGaCGUCGUCGUGuCCGGCUGgucc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 25684 | 0.66 | 0.463131 |
Target: 5'- cGGC-GCAGCAGC---GGCCGA-CAGa -3' miRNA: 3'- -CCGaCGUCGUCGuguCCGGCUgGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 42650 | 0.67 | 0.443879 |
Target: 5'- cGGauCUGCAaCAGCAaggccauucgcCGGGCC-ACCAGGa -3' miRNA: 3'- -CC--GACGUcGUCGU-----------GUCCGGcUGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 39064 | 0.67 | 0.434423 |
Target: 5'- cGCUGCGGCuGCGCAGGgcaUGAUCu-- -3' miRNA: 3'- cCGACGUCGuCGUGUCCg--GCUGGucc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 32388 | 0.67 | 0.434423 |
Target: 5'- cGGagaUGCGGCGccgcGCAgAGGCCGuugucGCCAGc -3' miRNA: 3'- -CCg--ACGUCGU----CGUgUCCGGC-----UGGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 44401 | 0.67 | 0.434423 |
Target: 5'- uGGCUGCAGaGGCuAUcGGCCGcGCCAc- -3' miRNA: 3'- -CCGACGUCgUCG-UGuCCGGC-UGGUcc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 5981 | 0.67 | 0.434423 |
Target: 5'- -aCUGUcgGGCcaucaaGGCGCAGGCCGucauccccaagGCCGGGu -3' miRNA: 3'- ccGACG--UCG------UCGUGUCCGGC-----------UGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 24580 | 0.67 | 0.434423 |
Target: 5'- cGCUGCGGgcgacCAGCGCAGGaUC-AUCGGGg -3' miRNA: 3'- cCGACGUC-----GUCGUGUCC-GGcUGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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