miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 3' -59.5 NC_003324.1 + 41550 0.66 0.513061
Target:  5'- cGCUaacGaCAGCGGCGCGGGCCuGuuccuCgCAGGu -3'
miRNA:   3'- cCGA---C-GUCGUCGUGUCCGG-Cu----G-GUCC- -5'
12377 3' -59.5 NC_003324.1 + 15456 0.66 0.513061
Target:  5'- aGGUUGcCAGgGGCG-AGGCCaaGGCCgAGGa -3'
miRNA:   3'- -CCGAC-GUCgUCGUgUCCGG--CUGG-UCC- -5'
12377 3' -59.5 NC_003324.1 + 38010 0.66 0.513061
Target:  5'- cGGUUGCGGC-GCACGGGgCGcgucaacauuccGCCGa- -3'
miRNA:   3'- -CCGACGUCGuCGUGUCCgGC------------UGGUcc -5'
12377 3' -59.5 NC_003324.1 + 48818 0.66 0.502887
Target:  5'- uGGcCUGCAGCcuGCugGcGCCGACgCGGu -3'
miRNA:   3'- -CC-GACGUCGu-CGugUcCGGCUG-GUCc -5'
12377 3' -59.5 NC_003324.1 + 13605 0.66 0.502887
Target:  5'- cGGCUGCAaauuccGCGaagacGCGCAGGC-GAUCGGc -3'
miRNA:   3'- -CCGACGU------CGU-----CGUGUCCGgCUGGUCc -5'
12377 3' -59.5 NC_003324.1 + 26457 0.66 0.492803
Target:  5'- -aCUGgaAGCAGCACcuGCCGAaCAGGu -3'
miRNA:   3'- ccGACg-UCGUCGUGucCGGCUgGUCC- -5'
12377 3' -59.5 NC_003324.1 + 8203 0.66 0.491799
Target:  5'- aGCUGCccGGCgggugaguuucAGCACAGGCgcaacggCGACCGuGGc -3'
miRNA:   3'- cCGACG--UCG-----------UCGUGUCCG-------GCUGGU-CC- -5'
12377 3' -59.5 NC_003324.1 + 129 0.66 0.476865
Target:  5'- uGGCUGCGGCAgGCagACGGGUcauacuucugCGAgguugggacugagcaCCAGGu -3'
miRNA:   3'- -CCGACGUCGU-CG--UGUCCG----------GCU---------------GGUCC- -5'
12377 3' -59.5 NC_003324.1 + 19614 0.66 0.47292
Target:  5'- uGGUuuUG-AGCAGCGCGGGCUG--CAGGu -3'
miRNA:   3'- -CCG--ACgUCGUCGUGUCCGGCugGUCC- -5'
12377 3' -59.5 NC_003324.1 + 8432 0.66 0.47292
Target:  5'- cGGCUGCAGguGC--AGGCgGAUUugcGGc -3'
miRNA:   3'- -CCGACGUCguCGugUCCGgCUGGu--CC- -5'
12377 3' -59.5 NC_003324.1 + 44310 0.66 0.47292
Target:  5'- gGGC-GCGGUGGCGC-GGCCGAUa--- -3'
miRNA:   3'- -CCGaCGUCGUCGUGuCCGGCUGgucc -5'
12377 3' -59.5 NC_003324.1 + 31315 0.66 0.47292
Target:  5'- cGGC--CGGCGGCGCuGGcGCUGGCgGGGg -3'
miRNA:   3'- -CCGacGUCGUCGUG-UC-CGGCUGgUCC- -5'
12377 3' -59.5 NC_003324.1 + 13401 0.66 0.47292
Target:  5'- uGCUGCAGCucGGCcagauACAGG-CGACUgAGGu -3'
miRNA:   3'- cCGACGUCG--UCG-----UGUCCgGCUGG-UCC- -5'
12377 3' -59.5 NC_003324.1 + 25684 0.66 0.463131
Target:  5'- cGGC-GCAGCAGC---GGCCGA-CAGa -3'
miRNA:   3'- -CCGaCGUCGUCGuguCCGGCUgGUCc -5'
12377 3' -59.5 NC_003324.1 + 42650 0.67 0.443879
Target:  5'- cGGauCUGCAaCAGCAaggccauucgcCGGGCC-ACCAGGa -3'
miRNA:   3'- -CC--GACGUcGUCGU-----------GUCCGGcUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 24580 0.67 0.434423
Target:  5'- cGCUGCGGgcgacCAGCGCAGGaUC-AUCGGGg -3'
miRNA:   3'- cCGACGUC-----GUCGUGUCC-GGcUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 44401 0.67 0.434423
Target:  5'- uGGCUGCAGaGGCuAUcGGCCGcGCCAc- -3'
miRNA:   3'- -CCGACGUCgUCG-UGuCCGGC-UGGUcc -5'
12377 3' -59.5 NC_003324.1 + 32388 0.67 0.434423
Target:  5'- cGGagaUGCGGCGccgcGCAgAGGCCGuugucGCCAGc -3'
miRNA:   3'- -CCg--ACGUCGU----CGUgUCCGGC-----UGGUCc -5'
12377 3' -59.5 NC_003324.1 + 39064 0.67 0.434423
Target:  5'- cGCUGCGGCuGCGCAGGgcaUGAUCu-- -3'
miRNA:   3'- cCGACGUCGuCGUGUCCg--GCUGGucc -5'
12377 3' -59.5 NC_003324.1 + 5981 0.67 0.434423
Target:  5'- -aCUGUcgGGCcaucaaGGCGCAGGCCGucauccccaagGCCGGGu -3'
miRNA:   3'- ccGACG--UCG------UCGUGUCCGGC-----------UGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.