miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 3' -59.5 NC_003324.1 + 30124 0.69 0.34674
Target:  5'- cGGCgugauggGCGGCGGCAUGGGUgGugUuGGu -3'
miRNA:   3'- -CCGa------CGUCGUCGUGUCCGgCugGuCC- -5'
12377 3' -59.5 NC_003324.1 + 48818 0.66 0.502887
Target:  5'- uGGcCUGCAGCcuGCugGcGCCGACgCGGu -3'
miRNA:   3'- -CC-GACGUCGu-CGugUcCGGCUG-GUCc -5'
12377 3' -59.5 NC_003324.1 + 26457 0.66 0.492803
Target:  5'- -aCUGgaAGCAGCACcuGCCGAaCAGGu -3'
miRNA:   3'- ccGACg-UCGUCGUGucCGGCUgGUCC- -5'
12377 3' -59.5 NC_003324.1 + 5981 0.67 0.434423
Target:  5'- -aCUGUcgGGCcaucaaGGCGCAGGCCGucauccccaagGCCGGGu -3'
miRNA:   3'- ccGACG--UCG------UCGUGUCCGGC-----------UGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 19226 0.67 0.425085
Target:  5'- cGCUcCAGaagaucaaGGaCGCGGGCCuGACCGGGa -3'
miRNA:   3'- cCGAcGUCg-------UC-GUGUCCGG-CUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 8203 0.66 0.491799
Target:  5'- aGCUGCccGGCgggugaguuucAGCACAGGCgcaacggCGACCGuGGc -3'
miRNA:   3'- cCGACG--UCG-----------UCGUGUCCG-------GCUGGU-CC- -5'
12377 3' -59.5 NC_003324.1 + 39064 0.67 0.434423
Target:  5'- cGCUGCGGCuGCGCAGGgcaUGAUCu-- -3'
miRNA:   3'- cCGACGUCGuCGUGUCCg--GCUGGucc -5'
12377 3' -59.5 NC_003324.1 + 44401 0.67 0.434423
Target:  5'- uGGCUGCAGaGGCuAUcGGCCGcGCCAc- -3'
miRNA:   3'- -CCGACGUCgUCG-UGuCCGGC-UGGUcc -5'
12377 3' -59.5 NC_003324.1 + 5625 0.68 0.388965
Target:  5'- aGGUUGCGGCGGCAacCGGgaacuugauGCCGAUCGa- -3'
miRNA:   3'- -CCGACGUCGUCGU--GUC---------CGGCUGGUcc -5'
12377 3' -59.5 NC_003324.1 + 29720 0.7 0.279286
Target:  5'- cGGCUcagGCGGCGGCguugcgccagaaGCAGGCagagccuccCGugCAGGa -3'
miRNA:   3'- -CCGA---CGUCGUCG------------UGUCCG---------GCugGUCC- -5'
12377 3' -59.5 NC_003324.1 + 35449 1.11 0.000266
Target:  5'- aGGCUGCAGCAGCACAGGCCGACCAGGc -3'
miRNA:   3'- -CCGACGUCGUCGUGUCCGGCUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 31315 0.66 0.47292
Target:  5'- cGGC--CGGCGGCGCuGGcGCUGGCgGGGg -3'
miRNA:   3'- -CCGacGUCGUCGUG-UC-CGGCUGgUCC- -5'
12377 3' -59.5 NC_003324.1 + 129 0.66 0.476865
Target:  5'- uGGCUGCGGCAgGCagACGGGUcauacuucugCGAgguugggacugagcaCCAGGu -3'
miRNA:   3'- -CCGACGUCGU-CG--UGUCCG----------GCU---------------GGUCC- -5'
12377 3' -59.5 NC_003324.1 + 35694 0.67 0.415868
Target:  5'- uGCUGCGcGCAGCAgAaGCCGACaucggcaagaAGGa -3'
miRNA:   3'- cCGACGU-CGUCGUgUcCGGCUGg---------UCC- -5'
12377 3' -59.5 NC_003324.1 + 1735 0.67 0.415868
Target:  5'- aGC-GuCAGCAgGCGCAGGCCGAguuucgugaCGGGa -3'
miRNA:   3'- cCGaC-GUCGU-CGUGUCCGGCUg--------GUCC- -5'
12377 3' -59.5 NC_003324.1 + 25684 0.66 0.463131
Target:  5'- cGGC-GCAGCAGC---GGCCGA-CAGa -3'
miRNA:   3'- -CCGaCGUCGUCGuguCCGGCUgGUCc -5'
12377 3' -59.5 NC_003324.1 + 56647 0.7 0.300542
Target:  5'- cGGCguuauggGCGGCGGCAUGGGUCG--CGGGc -3'
miRNA:   3'- -CCGa------CGUCGUCGUGUCCGGCugGUCC- -5'
12377 3' -59.5 NC_003324.1 + 42956 0.7 0.272471
Target:  5'- cGGUcGCAGauccuCGCGGGCCGGCCGGc -3'
miRNA:   3'- -CCGaCGUCguc--GUGUCCGGCUGGUCc -5'
12377 3' -59.5 NC_003324.1 + 32388 0.67 0.434423
Target:  5'- cGGagaUGCGGCGccgcGCAgAGGCCGuugucGCCAGc -3'
miRNA:   3'- -CCg--ACGUCGU----CGUgUCCGGC-----UGGUCc -5'
12377 3' -59.5 NC_003324.1 + 33756 0.67 0.425085
Target:  5'- uGCcuugGCGGCAGCGCAGGCguauCGAgCguagaAGGg -3'
miRNA:   3'- cCGa---CGUCGUCGUGUCCG----GCUgG-----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.