miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12380 5' -60.1 NC_003324.1 + 38169 1.1 0.000308
Target:  5'- aGCACGGCGCCGACGCGCUUCGCCAGAa -3'
miRNA:   3'- -CGUGCCGCGGCUGCGCGAAGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 19495 0.78 0.080869
Target:  5'- aGCGuCGGCGUCGGCGUGCUUCuuGCCgcGGAa -3'
miRNA:   3'- -CGU-GCCGCGGCUGCGCGAAG--CGG--UCU- -5'
12380 5' -60.1 NC_003324.1 + 20586 0.77 0.092784
Target:  5'- aGCGggaucCGGUGCUGugGCGCcgUCGCCAGu -3'
miRNA:   3'- -CGU-----GCCGCGGCugCGCGa-AGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 42634 0.76 0.11198
Target:  5'- cGCGCGGCGCCgGGCGCggaucuGCaacagcaaggccaUUCGCCGGGc -3'
miRNA:   3'- -CGUGCCGCGG-CUGCG------CG-------------AAGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 19469 0.75 0.135566
Target:  5'- uGCACGGCG-CGACGCGCgccggCGUCGa- -3'
miRNA:   3'- -CGUGCCGCgGCUGCGCGaa---GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 53979 0.73 0.172002
Target:  5'- cGguCGGCGCCGACGCGUguucaugcaUUCcauGUCGGAc -3'
miRNA:   3'- -CguGCCGCGGCUGCGCG---------AAG---CGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 24391 0.73 0.180738
Target:  5'- gGCAUGGUGCgcguccgCGACGC-CUUCGCCAa- -3'
miRNA:   3'- -CGUGCCGCG-------GCUGCGcGAAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 48806 0.71 0.234009
Target:  5'- uGC-UGGCGCCGACGCGgUuggCGCCc-- -3'
miRNA:   3'- -CGuGCCGCGGCUGCGCgAa--GCGGucu -5'
12380 5' -60.1 NC_003324.1 + 49897 0.71 0.239947
Target:  5'- uCGCuGCGUCGGCGCGCUcgugcUCGCCu-- -3'
miRNA:   3'- cGUGcCGCGGCUGCGCGA-----AGCGGucu -5'
12380 5' -60.1 NC_003324.1 + 41665 0.71 0.258519
Target:  5'- cGCgACGuaGCCGACGCGCacugUGCCAa- -3'
miRNA:   3'- -CG-UGCcgCGGCUGCGCGaa--GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 3243 0.7 0.264314
Target:  5'- gGCGCGGUGCCGGUGCuuucggaGC-UCGCCAa- -3'
miRNA:   3'- -CGUGCCGCGGCUGCG-------CGaAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 32382 0.7 0.264965
Target:  5'- -uGCGGCGCCG-CGCagagGCcguugUCGCCAGc -3'
miRNA:   3'- cgUGCCGCGGCuGCG----CGa----AGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 27186 0.7 0.271541
Target:  5'- aGCgACcGCGCUGGUGUGCUgCGCCAGAu -3'
miRNA:   3'- -CG-UGcCGCGGCUGCGCGAaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 29890 0.7 0.285085
Target:  5'- aUACGGCGCgaucuuCGGCGCGCUgcUgGCCAu- -3'
miRNA:   3'- cGUGCCGCG------GCUGCGCGA--AgCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 31038 0.7 0.287857
Target:  5'- gGCGCGGUcggcguucaacuccuGCUGACGCGCUgcgacgGCCuGAu -3'
miRNA:   3'- -CGUGCCG---------------CGGCUGCGCGAag----CGGuCU- -5'
12380 5' -60.1 NC_003324.1 + 39650 0.7 0.292055
Target:  5'- gGC-UGGUGCUGACGUGg--CGCCAGGc -3'
miRNA:   3'- -CGuGCCGCGGCUGCGCgaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 18103 0.7 0.292055
Target:  5'- cGCAUGGC-CCGugGCGCcg-GCCAa- -3'
miRNA:   3'- -CGUGCCGcGGCugCGCGaagCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 49977 0.7 0.299157
Target:  5'- aGCACGagcGCGCCGACGCauGCgaucuuugccCGCCGGc -3'
miRNA:   3'- -CGUGC---CGCGGCUGCG--CGaa--------GCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 18129 0.69 0.306392
Target:  5'- cGCAgCGGCGUguauuCGACGCcgGUUUCGCCGa- -3'
miRNA:   3'- -CGU-GCCGCG-----GCUGCG--CGAAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 55329 0.69 0.306392
Target:  5'- cGCGCGGUGCCGucCGCcgGCa-CGUCGGAu -3'
miRNA:   3'- -CGUGCCGCGGCu-GCG--CGaaGCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.