miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12380 5' -60.1 NC_003324.1 + 3243 0.7 0.264314
Target:  5'- gGCGCGGUGCCGGUGCuuucggaGC-UCGCCAa- -3'
miRNA:   3'- -CGUGCCGCGGCUGCG-------CGaAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 3555 0.67 0.412462
Target:  5'- -aACGGCGCUucgGugGCGCc-CGCCAu- -3'
miRNA:   3'- cgUGCCGCGG---CugCGCGaaGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 5428 0.68 0.374948
Target:  5'- -uGCGGCGCCGAguucuucuccgcauCGaCGCUggGUCAGGc -3'
miRNA:   3'- cgUGCCGCGGCU--------------GC-GCGAagCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 5495 0.66 0.458877
Target:  5'- --uCGGCGCCGcAgGUGCgggCGCCAu- -3'
miRNA:   3'- cguGCCGCGGC-UgCGCGaa-GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 6202 0.68 0.369063
Target:  5'- cGCuauCGGCGuaGGCGCGgguaacgaCUUCGCCAa- -3'
miRNA:   3'- -CGu--GCCGCggCUGCGC--------GAAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 7727 0.66 0.458877
Target:  5'- aGC-CGGCacuGCCGGCGCGaCUcCGCgaAGAu -3'
miRNA:   3'- -CGuGCCG---CGGCUGCGC-GAaGCGg-UCU- -5'
12380 5' -60.1 NC_003324.1 + 8100 0.66 0.472366
Target:  5'- cCACGGuCGCCGuuGCGCcUgugcugaaacucaccCGCCGGGc -3'
miRNA:   3'- cGUGCC-GCGGCugCGCGaA---------------GCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 8282 0.67 0.403532
Target:  5'- uGguCGaaGUGCCaGGCGCGCgcCGCCGGGc -3'
miRNA:   3'- -CguGC--CGCGG-CUGCGCGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 11125 0.69 0.328898
Target:  5'- cGCuAUGGC-CCGACcuuggucCGCUUCGCCGGu -3'
miRNA:   3'- -CG-UGCCGcGGCUGc------GCGAAGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 13323 0.66 0.497932
Target:  5'- aGCuugaGGUGCuCGACGgcaGCcgCGCCGGAc -3'
miRNA:   3'- -CGug--CCGCG-GCUGCg--CGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 14356 0.66 0.457921
Target:  5'- aGCGCGG-GCCGACGUauccacgGCUgcuGCCAa- -3'
miRNA:   3'- -CGUGCCgCGGCUGCG-------CGAag-CGGUcu -5'
12380 5' -60.1 NC_003324.1 + 14575 0.66 0.50793
Target:  5'- uCGCGGCcuGCCGGCGCaaGCg--GCCGGc -3'
miRNA:   3'- cGUGCCG--CGGCUGCG--CGaagCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 14664 0.67 0.403532
Target:  5'- -uGCGcCGCCGGC-CGCUUgCGCCGGc -3'
miRNA:   3'- cgUGCcGCGGCUGcGCGAA-GCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 15054 0.68 0.352601
Target:  5'- cGCAUaGGUGCCGACGUGaugccCGCCGu- -3'
miRNA:   3'- -CGUG-CCGCGGCUGCGCgaa--GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 15137 0.67 0.453158
Target:  5'- aCACGGCGCC-ACGUgaaaagGCUcgccgccgaucuccaUCGCCGGu -3'
miRNA:   3'- cGUGCCGCGGcUGCG------CGA---------------AGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 15650 0.66 0.457921
Target:  5'- gGCgACGGCcCCGGCGCGCUcgaugacgcgaUCaaggcggGCCAGc -3'
miRNA:   3'- -CG-UGCCGcGGCUGCGCGA-----------AG-------CGGUCu -5'
12380 5' -60.1 NC_003324.1 + 17168 0.67 0.412462
Target:  5'- aGCGauugacgaGGCGCUGGCGCGUc-UGUCGGAc -3'
miRNA:   3'- -CGUg-------CCGCGGCUGCGCGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 17561 0.67 0.421513
Target:  5'- gGUcCGGCauGCCGAUGCGCgaCGaCAGAu -3'
miRNA:   3'- -CGuGCCG--CGGCUGCGCGaaGCgGUCU- -5'
12380 5' -60.1 NC_003324.1 + 18103 0.7 0.292055
Target:  5'- cGCAUGGC-CCGugGCGCcg-GCCAa- -3'
miRNA:   3'- -CGUGCCGcGGCugCGCGaagCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 18129 0.69 0.306392
Target:  5'- cGCAgCGGCGUguauuCGACGCcgGUUUCGCCGa- -3'
miRNA:   3'- -CGU-GCCGCG-----GCUGCG--CGAAGCGGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.