miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12380 5' -60.1 NC_003324.1 + 43790 0.68 0.398233
Target:  5'- aGCAgGGUGCCGggaacgccggcaagGCGCGUgaaaucacggauggcCGCCGGAu -3'
miRNA:   3'- -CGUgCCGCGGC--------------UGCGCGaa-------------GCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 56229 0.69 0.321263
Target:  5'- -gGCGGCGacauccugcauCCGucCGUGCUUCGCCAa- -3'
miRNA:   3'- cgUGCCGC-----------GGCu-GCGCGAAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 11125 0.69 0.328898
Target:  5'- cGCuAUGGC-CCGACcuuggucCGCUUCGCCGGu -3'
miRNA:   3'- -CG-UGCCGcGGCUGc------GCGAAGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 41937 0.69 0.336666
Target:  5'- gGUACcGCGuucCCGAUGCGCUcUCGCCAa- -3'
miRNA:   3'- -CGUGcCGC---GGCUGCGCGA-AGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 50124 0.69 0.344568
Target:  5'- -aGCGGCGCCaugccuuuggaGCGUGCc-CGCCAGAu -3'
miRNA:   3'- cgUGCCGCGGc----------UGCGCGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 53920 0.68 0.352601
Target:  5'- aGCGCGGCaa-G-UGCGCUUCGCCGc- -3'
miRNA:   3'- -CGUGCCGcggCuGCGCGAAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 25172 0.68 0.369063
Target:  5'- aUACgGGCGCCGuCGCGCagcUCaCCAGGc -3'
miRNA:   3'- cGUG-CCGCGGCuGCGCGa--AGcGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 5428 0.68 0.374948
Target:  5'- -uGCGGCGCCGAguucuucuccgcauCGaCGCUggGUCAGGc -3'
miRNA:   3'- cgUGCCGCGGCU--------------GC-GCGAagCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 44319 0.68 0.392108
Target:  5'- gGCGCGGCcgauagccucugcaGCCacGGCGCGCgcugCGCCcuuGAa -3'
miRNA:   3'- -CGUGCCG--------------CGG--CUGCGCGaa--GCGGu--CU- -5'
12380 5' -60.1 NC_003324.1 + 32500 0.69 0.321263
Target:  5'- uCACGGUGUCGACGauguCGCUccaaUCGCgGGGc -3'
miRNA:   3'- cGUGCCGCGGCUGC----GCGA----AGCGgUCU- -5'
12380 5' -60.1 NC_003324.1 + 19376 0.69 0.313761
Target:  5'- aGCgAUGGaucgaCGCCGGCGCGCgucgCGCCGu- -3'
miRNA:   3'- -CG-UGCC-----GCGGCUGCGCGaa--GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 47674 0.69 0.313018
Target:  5'- uGCGCuGGacaguucCGUCGGCGCGCUUCGCg--- -3'
miRNA:   3'- -CGUG-CC-------GCGGCUGCGCGAAGCGgucu -5'
12380 5' -60.1 NC_003324.1 + 20586 0.77 0.092784
Target:  5'- aGCGggaucCGGUGCUGugGCGCcgUCGCCAGu -3'
miRNA:   3'- -CGU-----GCCGCGGCugCGCGa-AGCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 42634 0.76 0.11198
Target:  5'- cGCGCGGCGCCgGGCGCggaucuGCaacagcaaggccaUUCGCCGGGc -3'
miRNA:   3'- -CGUGCCGCGG-CUGCG------CG-------------AAGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 53979 0.73 0.172002
Target:  5'- cGguCGGCGCCGACGCGUguucaugcaUUCcauGUCGGAc -3'
miRNA:   3'- -CguGCCGCGGCUGCGCG---------AAG---CGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 49897 0.71 0.239947
Target:  5'- uCGCuGCGUCGGCGCGCUcgugcUCGCCu-- -3'
miRNA:   3'- cGUGcCGCGGCUGCGCGA-----AGCGGucu -5'
12380 5' -60.1 NC_003324.1 + 41665 0.71 0.258519
Target:  5'- cGCgACGuaGCCGACGCGCacugUGCCAa- -3'
miRNA:   3'- -CG-UGCcgCGGCUGCGCGaa--GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 29890 0.7 0.285085
Target:  5'- aUACGGCGCgaucuuCGGCGCGCUgcUgGCCAu- -3'
miRNA:   3'- cGUGCCGCG------GCUGCGCGA--AgCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 31038 0.7 0.287857
Target:  5'- gGCGCGGUcggcguucaacuccuGCUGACGCGCUgcgacgGCCuGAu -3'
miRNA:   3'- -CGUGCCG---------------CGGCUGCGCGAag----CGGuCU- -5'
12380 5' -60.1 NC_003324.1 + 18129 0.69 0.306392
Target:  5'- cGCAgCGGCGUguauuCGACGCcgGUUUCGCCGa- -3'
miRNA:   3'- -CGU-GCCGCG-----GCUGCG--CGAAGCGGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.