miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12388 3' -56.2 NC_003324.1 + 55534 0.66 0.676433
Target:  5'- gUCGAGCGCCaa--AUCAGCGugCGu -3'
miRNA:   3'- aAGUUUGCGGccggUAGUCGCugGCu -5'
12388 3' -56.2 NC_003324.1 + 32474 0.66 0.66548
Target:  5'- gUCGccuuCGCCGGCagccUCGGCGAUCa- -3'
miRNA:   3'- aAGUuu--GCGGCCGgu--AGUCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 21388 0.66 0.66548
Target:  5'- aUCGAGgauauCGCCGGCgAggcggCGaacGCGGCCGAg -3'
miRNA:   3'- aAGUUU-----GCGGCCGgUa----GU---CGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 29991 0.66 0.654496
Target:  5'- ----cGCGCCguccagcauGGCCAgCAGCGcGCCGAa -3'
miRNA:   3'- aaguuUGCGG---------CCGGUaGUCGC-UGGCU- -5'
12388 3' -56.2 NC_003324.1 + 11143 0.66 0.654496
Target:  5'- gUCcgcuuCGCCGGUCu--GGCGGCCGGc -3'
miRNA:   3'- aAGuuu--GCGGCCGGuagUCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 21086 0.66 0.643491
Target:  5'- uUUC-GGCG-CGGCCAUCauugcGGCGAuCCGAc -3'
miRNA:   3'- -AAGuUUGCgGCCGGUAG-----UCGCU-GGCU- -5'
12388 3' -56.2 NC_003324.1 + 28898 0.66 0.632476
Target:  5'- ------gGCCGGCCucguccuUCGcuGCGACCGAu -3'
miRNA:   3'- aaguuugCGGCCGGu------AGU--CGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 27649 0.66 0.632476
Target:  5'- cUCGAAcCGCUuGCCGUUcGCGACCa- -3'
miRNA:   3'- aAGUUU-GCGGcCGGUAGuCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 47621 0.66 0.632476
Target:  5'- ----cACGCCGcGCaugaCGGCGACCGGg -3'
miRNA:   3'- aaguuUGCGGC-CGgua-GUCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 4834 0.66 0.62807
Target:  5'- uUUCAGugacuaugGCGCCGGCaacaacguuGCGGCCGGu -3'
miRNA:   3'- -AAGUU--------UGCGGCCGguagu----CGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 5208 0.66 0.621461
Target:  5'- cUCuauCGCUGGCg--CGGCGACCGc -3'
miRNA:   3'- aAGuuuGCGGCCGguaGUCGCUGGCu -5'
12388 3' -56.2 NC_003324.1 + 1947 0.67 0.610455
Target:  5'- -aCGGACcCCGGcCCGUgAGCGAgCGGa -3'
miRNA:   3'- aaGUUUGcGGCC-GGUAgUCGCUgGCU- -5'
12388 3' -56.2 NC_003324.1 + 21847 0.67 0.599468
Target:  5'- gUUCGcGCaGCCgGGCCuccUCGGCGGCCu- -3'
miRNA:   3'- -AAGUuUG-CGG-CCGGu--AGUCGCUGGcu -5'
12388 3' -56.2 NC_003324.1 + 49499 0.67 0.599468
Target:  5'- -cCAAGCGCCGcugccgggcucGCCgAUC-GCGAUCGAg -3'
miRNA:   3'- aaGUUUGCGGC-----------CGG-UAGuCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 48748 0.67 0.588509
Target:  5'- -gCAGGCuGCaGGCCAUCAGCGAagCGc -3'
miRNA:   3'- aaGUUUG-CGgCCGGUAGUCGCUg-GCu -5'
12388 3' -56.2 NC_003324.1 + 10291 0.67 0.588509
Target:  5'- -aCuuGCGCCGGCaugaUAUUGGCG-CCGAu -3'
miRNA:   3'- aaGuuUGCGGCCG----GUAGUCGCuGGCU- -5'
12388 3' -56.2 NC_003324.1 + 43010 0.67 0.577587
Target:  5'- -aCGAGacCGCCGGCg--CAGUGACCGc -3'
miRNA:   3'- aaGUUU--GCGGCCGguaGUCGCUGGCu -5'
12388 3' -56.2 NC_003324.1 + 30164 0.67 0.577587
Target:  5'- --aAGGCGUCGaggaaGCCG-CAGCGGCCGGu -3'
miRNA:   3'- aagUUUGCGGC-----CGGUaGUCGCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 42669 0.67 0.56671
Target:  5'- -cCAuuCGCCgGGCCAcCAG-GACCGGc -3'
miRNA:   3'- aaGUuuGCGG-CCGGUaGUCgCUGGCU- -5'
12388 3' -56.2 NC_003324.1 + 42068 0.68 0.549419
Target:  5'- aUCAAGCGCaCGGauuacggcaacgagcCUAUCAGCaggGGCCGGg -3'
miRNA:   3'- aAGUUUGCG-GCC---------------GGUAGUCG---CUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.