Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12389 | 3' | -59.5 | NC_003324.1 | + | 56626 | 0.67 | 0.402348 |
Target: 5'- gGGUcGCGGGCAacuuCGCCcgcaucgcaugccaAAUGuugugcgcaGCGCCGCg -3' miRNA: 3'- -UCGuCGCCCGU----GCGG--------------UUAC---------UGCGGCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 5667 | 0.67 | 0.423323 |
Target: 5'- cGGUGGaaacgaucaCGGuCAgGCCGAUGACGcCCGCg -3' miRNA: 3'- -UCGUC---------GCCcGUgCGGUUACUGC-GGCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 29977 | 0.66 | 0.461309 |
Target: 5'- uGGcCAGCa-GCGCGCCGAaGaucGCGCCGUa -3' miRNA: 3'- -UC-GUCGccCGUGCGGUUaC---UGCGGCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 30806 | 0.66 | 0.490945 |
Target: 5'- gAGCAGCaGGCG-GCC---GACGCCa- -3' miRNA: 3'- -UCGUCGcCCGUgCGGuuaCUGCGGcg -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 20355 | 0.7 | 0.299083 |
Target: 5'- gAGCGGUGGcccGCugaGCCcguAUGACGCCGg -3' miRNA: 3'- -UCGUCGCC---CGug-CGGu--UACUGCGGCg -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 24187 | 0.68 | 0.353307 |
Target: 5'- gAGCAGaacuacgacaaGGGUaucaGCGCCAccGUGGCGCagCGCa -3' miRNA: 3'- -UCGUCg----------CCCG----UGCGGU--UACUGCG--GCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 30361 | 0.67 | 0.423323 |
Target: 5'- cGGCGGCuuGGGCGaccgUGCCu-UGGC-CCGCa -3' miRNA: 3'- -UCGUCG--CCCGU----GCGGuuACUGcGGCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 51513 | 0.66 | 0.511184 |
Target: 5'- cAGCAGCGuucucgcGCAC-CCAAauccgGuCGCCGCg -3' miRNA: 3'- -UCGUCGCc------CGUGcGGUUa----CuGCGGCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 15224 | 0.68 | 0.361598 |
Target: 5'- cGGCGGCGaGCcuuuucacgugGCGCCGugucGACGCCGa -3' miRNA: 3'- -UCGUCGCcCG-----------UGCGGUua--CUGCGGCg -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 49320 | 0.66 | 0.511184 |
Target: 5'- gGGCccguCGGGC-UGCCcgaucAUGGCGUCGCa -3' miRNA: 3'- -UCGuc--GCCCGuGCGGu----UACUGCGGCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 3610 | 0.67 | 0.423323 |
Target: 5'- uGCAGCcGGUucCGCUcccAUGACGCCGa -3' miRNA: 3'- uCGUCGcCCGu-GCGGu--UACUGCGGCg -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 44671 | 0.68 | 0.378584 |
Target: 5'- uGCAaCGGGCAguuccuCGCCGccGUGuCGCUGCc -3' miRNA: 3'- uCGUcGCCCGU------GCGGU--UACuGCGGCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 30604 | 0.67 | 0.442086 |
Target: 5'- cGGCAGCGGcaGCGaagguCGCCAcgGuCGCagGCg -3' miRNA: 3'- -UCGUCGCC--CGU-----GCGGUuaCuGCGg-CG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 30570 | 0.66 | 0.461309 |
Target: 5'- cGCAGUuuccgaGGGCcugcucggcgGCGCCGAUucGAC-CCGCa -3' miRNA: 3'- uCGUCG------CCCG----------UGCGGUUA--CUGcGGCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 19580 | 0.66 | 0.471085 |
Target: 5'- cGCGGCaagaaGCACGCC---GACGCCGa -3' miRNA: 3'- uCGUCGcc---CGUGCGGuuaCUGCGGCg -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 3222 | 0.66 | 0.50102 |
Target: 5'- gAGCucGCcaagGGGCGCGUCGAUcACGCCu- -3' miRNA: 3'- -UCGu-CG----CCCGUGCGGUUAcUGCGGcg -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 32155 | 0.71 | 0.251527 |
Target: 5'- cGCAGCGaGGCcgaagaGCCAuuUGACGCCuuGCu -3' miRNA: 3'- uCGUCGC-CCGug----CGGUu-ACUGCGG--CG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 48737 | 0.7 | 0.299083 |
Target: 5'- cAGcCAGCGucuccuGGCucAUGCCGAUGAUGuuGCg -3' miRNA: 3'- -UC-GUCGC------CCG--UGCGGUUACUGCggCG- -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 28754 | 0.69 | 0.3215 |
Target: 5'- gGGCAGCgucuaccaGGuGCAUGCCGAUGGCaCCa- -3' miRNA: 3'- -UCGUCG--------CC-CGUGCGGUUACUGcGGcg -5' |
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12389 | 3' | -59.5 | NC_003324.1 | + | 35568 | 0.69 | 0.34515 |
Target: 5'- aAGCAGCcGGUACGgCGAU--CGCCGUc -3' miRNA: 3'- -UCGUCGcCCGUGCgGUUAcuGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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