miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12389 3' -59.5 NC_003324.1 + 38106 0.66 0.461309
Target:  5'- cGGuCGGCGGaauguugaCGCGCCccGUG-CGCCGCa -3'
miRNA:   3'- -UC-GUCGCCc-------GUGCGGu-UACuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 42997 0.66 0.511184
Target:  5'- cGCAGUGa-C-CGCCAAUGGucgcccCGCCGCu -3'
miRNA:   3'- uCGUCGCccGuGCGGUUACU------GCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 49320 0.66 0.511184
Target:  5'- gGGCccguCGGGC-UGCCcgaucAUGGCGUCGCa -3'
miRNA:   3'- -UCGuc--GCCCGuGCGGu----UACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 51513 0.66 0.511184
Target:  5'- cAGCAGCGuucucgcGCAC-CCAAauccgGuCGCCGCg -3'
miRNA:   3'- -UCGUCGCc------CGUGcGGUUa----CuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 30806 0.66 0.490945
Target:  5'- gAGCAGCaGGCG-GCC---GACGCCa- -3'
miRNA:   3'- -UCGUCGcCCGUgCGGuuaCUGCGGcg -5'
12389 3' -59.5 NC_003324.1 + 3222 0.66 0.50102
Target:  5'- gAGCucGCcaagGGGCGCGUCGAUcACGCCu- -3'
miRNA:   3'- -UCGu-CG----CCCGUGCGGUUAcUGCGGcg -5'
12389 3' -59.5 NC_003324.1 + 31322 0.66 0.480965
Target:  5'- cGCAGUGcGGCcgGCGgCGcUGGCGCUGg -3'
miRNA:   3'- uCGUCGC-CCG--UGCgGUuACUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 47198 0.66 0.480965
Target:  5'- aGGgGGUGGuGCAguCGCCAGacuUGCCGCa -3'
miRNA:   3'- -UCgUCGCC-CGU--GCGGUUacuGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 19580 0.66 0.471085
Target:  5'- cGCGGCaagaaGCACGCC---GACGCCGa -3'
miRNA:   3'- uCGUCGcc---CGUGCGGuuaCUGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 20543 0.66 0.471085
Target:  5'- uGCGGCGaucgaGCGCGUucuCAAUGACgGCCGg -3'
miRNA:   3'- uCGUCGCc----CGUGCG---GUUACUG-CGGCg -5'
12389 3' -59.5 NC_003324.1 + 44913 1.1 0.000323
Target:  5'- cAGCAGCGGGCACGCCAAUGACGCCGCc -3'
miRNA:   3'- -UCGUCGCCCGUGCGGUUACUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 29977 0.66 0.461309
Target:  5'- uGGcCAGCa-GCGCGCCGAaGaucGCGCCGUa -3'
miRNA:   3'- -UC-GUCGccCGUGCGGUUaC---UGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 30570 0.66 0.461309
Target:  5'- cGCAGUuuccgaGGGCcugcucggcgGCGCCGAUucGAC-CCGCa -3'
miRNA:   3'- uCGUCG------CCCG----------UGCGGUUA--CUGcGGCG- -5'
12389 3' -59.5 NC_003324.1 + 22677 0.67 0.451641
Target:  5'- cGCGGCaGGCA-GCCAAaagGcCGCCGa -3'
miRNA:   3'- uCGUCGcCCGUgCGGUUa--CuGCGGCg -5'
12389 3' -59.5 NC_003324.1 + 45195 0.67 0.450681
Target:  5'- cGGCAGCGGuCGagaGCCugaacaaGAUGGCGCgGUc -3'
miRNA:   3'- -UCGUCGCCcGUg--CGG-------UUACUGCGgCG- -5'
12389 3' -59.5 NC_003324.1 + 30604 0.67 0.442086
Target:  5'- cGGCAGCGGcaGCGaagguCGCCAcgGuCGCagGCg -3'
miRNA:   3'- -UCGUCGCC--CGU-----GCGGUuaCuGCGg-CG- -5'
12389 3' -59.5 NC_003324.1 + 5559 0.67 0.432645
Target:  5'- aAGCAGUcuugagcgugGGGCGgGC----GACGCCGCc -3'
miRNA:   3'- -UCGUCG----------CCCGUgCGguuaCUGCGGCG- -5'
12389 3' -59.5 NC_003324.1 + 44415 0.67 0.429836
Target:  5'- cGCAGC--GCGCGCCG-UGGCugcagaggcuaucgGCCGCg -3'
miRNA:   3'- uCGUCGccCGUGCGGUuACUG--------------CGGCG- -5'
12389 3' -59.5 NC_003324.1 + 30361 0.67 0.423323
Target:  5'- cGGCGGCuuGGGCGaccgUGCCu-UGGC-CCGCa -3'
miRNA:   3'- -UCGUCG--CCCGU----GCGGuuACUGcGGCG- -5'
12389 3' -59.5 NC_003324.1 + 3610 0.67 0.423323
Target:  5'- uGCAGCcGGUucCGCUcccAUGACGCCGa -3'
miRNA:   3'- uCGUCGcCCGu-GCGGu--UACUGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.