miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 49170 1.14 0.001606
Target:  5'- gGCAGCGAAAUAGACGCCGCUUUCGGCc -3'
miRNA:   3'- -CGUCGCUUUAUCUGCGGCGAAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 17186 0.78 0.34232
Target:  5'- gGC-GCGucuGUcGGACGCgGCUUUCGGCg -3'
miRNA:   3'- -CGuCGCuu-UA-UCUGCGgCGAAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 25682 0.78 0.350866
Target:  5'- cGCGGCGAGGUGGACGCaGUaUUcCGGUc -3'
miRNA:   3'- -CGUCGCUUUAUCUGCGgCGaAA-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 2676 0.77 0.386545
Target:  5'- cCAGCGc---GGugGCCGCU-UCGGCa -3'
miRNA:   3'- cGUCGCuuuaUCugCGGCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 20610 0.77 0.395831
Target:  5'- cCGGCGcuGAUGGGCGCuUGCggUCGGCg -3'
miRNA:   3'- cGUCGCu-UUAUCUGCG-GCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 16112 0.76 0.424535
Target:  5'- uGCAGCGAGGUGGuccuGCGCagggCGCU-UCGGUa -3'
miRNA:   3'- -CGUCGCUUUAUC----UGCG----GCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 5428 0.74 0.513135
Target:  5'- uCAGCGucg-GGGCGCCGUUggugucgagaucgUCGGCg -3'
miRNA:   3'- cGUCGCuuuaUCUGCGGCGAa------------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 33575 0.74 0.539238
Target:  5'- gGCGGCGGGAUcGAgGaCCGCauuguuacgUUCGGCg -3'
miRNA:   3'- -CGUCGCUUUAuCUgC-GGCGa--------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 5351 0.74 0.560217
Target:  5'- aUAGCGAGAUcgaGGAuaucgccUGCCGCUggugCGGCg -3'
miRNA:   3'- cGUCGCUUUA---UCU-------GCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 19600 0.73 0.617447
Target:  5'- aGCGGCu-GAUGGACGCCuuccgCGGCa -3'
miRNA:   3'- -CGUCGcuUUAUCUGCGGcgaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 18129 0.72 0.628751
Target:  5'- cGCAGCGgcGUGuauucGACGCCGgUUUCGcCg -3'
miRNA:   3'- -CGUCGCuuUAU-----CUGCGGCgAAAGCcG- -5'
12397 3' -50.6 NC_003324.1 + 3807 0.71 0.685097
Target:  5'- uCAGCGG---GGAUuaCGCUUUUGGCg -3'
miRNA:   3'- cGUCGCUuuaUCUGcgGCGAAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 29073 0.71 0.718355
Target:  5'- -aAGCGAAAUcGACGCUGC---CGGUg -3'
miRNA:   3'- cgUCGCUUUAuCUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 34618 0.7 0.740097
Target:  5'- cGCAGCuccggGAGGcgcUGGGCGauuCCGCUggCGGCa -3'
miRNA:   3'- -CGUCG-----CUUU---AUCUGC---GGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30314 0.7 0.740097
Target:  5'- uCGGCGGu---GGCGUCGC--UCGGCg -3'
miRNA:   3'- cGUCGCUuuauCUGCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 43355 0.7 0.750802
Target:  5'- uCGGCGAAAUccuugAGAaacUGCCGCUgccaGGCg -3'
miRNA:   3'- cGUCGCUUUA-----UCU---GCGGCGAaag-CCG- -5'
12397 3' -50.6 NC_003324.1 + 1173 0.7 0.761379
Target:  5'- aGCcGCGAAAgAGACGCUGaaaucCGGCc -3'
miRNA:   3'- -CGuCGCUUUaUCUGCGGCgaaa-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 6233 0.7 0.761379
Target:  5'- gGCAGCGcauuccAGGCGgcgcgggucaguCCGCUaUCGGCg -3'
miRNA:   3'- -CGUCGCuuua--UCUGC------------GGCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 14797 0.7 0.761379
Target:  5'- cGCGGCGAAGa--ACGCgGCcggcaUCGGCa -3'
miRNA:   3'- -CGUCGCUUUaucUGCGgCGaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 55044 0.7 0.771816
Target:  5'- -aGGCGGAcggcUGGGCuGCCGCga-CGGCg -3'
miRNA:   3'- cgUCGCUUu---AUCUG-CGGCGaaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.