miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 1173 0.7 0.761379
Target:  5'- aGCcGCGAAAgAGACGCUGaaaucCGGCc -3'
miRNA:   3'- -CGuCGCUUUaUCUGCGGCgaaa-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 2676 0.77 0.386545
Target:  5'- cCAGCGc---GGugGCCGCU-UCGGCa -3'
miRNA:   3'- cGUCGCuuuaUCugCGGCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 3153 0.68 0.857511
Target:  5'- -gAGCGGGA---GCGCCGUg--CGGCc -3'
miRNA:   3'- cgUCGCUUUaucUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 3807 0.71 0.685097
Target:  5'- uCAGCGG---GGAUuaCGCUUUUGGCg -3'
miRNA:   3'- cGUCGCUuuaUCUGcgGCGAAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 5177 0.66 0.940253
Target:  5'- aGCGGCGcAGAUcGucgaucGCGCCGCUUaagcuaUCaGGCc -3'
miRNA:   3'- -CGUCGC-UUUAuC------UGCGGCGAA------AG-CCG- -5'
12397 3' -50.6 NC_003324.1 + 5220 0.66 0.927584
Target:  5'- cGCGGCGAccgcaauccgguucGAgcaucaguUGGcCGCCGCaccagCGGCa -3'
miRNA:   3'- -CGUCGCU--------------UU--------AUCuGCGGCGaaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 5351 0.74 0.560217
Target:  5'- aUAGCGAGAUcgaGGAuaucgccUGCCGCUggugCGGCg -3'
miRNA:   3'- cGUCGCUUUA---UCU-------GCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 5392 0.69 0.801182
Target:  5'- aGCGGCGAuuucggcucggaaGAUGG-CGcCCGCaccugCGGCg -3'
miRNA:   3'- -CGUCGCU-------------UUAUCuGC-GGCGaaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 5428 0.74 0.513135
Target:  5'- uCAGCGucg-GGGCGCCGUUggugucgagaucgUCGGCg -3'
miRNA:   3'- cGUCGCuuuaUCUGCGGCGAa------------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 6233 0.7 0.761379
Target:  5'- gGCAGCGcauuccAGGCGgcgcgggucaguCCGCUaUCGGCg -3'
miRNA:   3'- -CGUCGCuuua--UCUGC------------GGCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 6675 0.66 0.945284
Target:  5'- aCGGCacauaGGACGCUGUgugccagUUCGGCu -3'
miRNA:   3'- cGUCGcuuuaUCUGCGGCGa------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 7747 0.66 0.929324
Target:  5'- uGCAGCGAcacAUAaACGCCaGC---CGGCa -3'
miRNA:   3'- -CGUCGCUu--UAUcUGCGG-CGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 11566 0.67 0.903971
Target:  5'- -gGGCGAGcagccGAUGCUGCUcccgCGGCu -3'
miRNA:   3'- cgUCGCUUuau--CUGCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 11617 0.66 0.940253
Target:  5'- gGCAGCGAu---GaACGUgCGCUUgaacgaCGGCg -3'
miRNA:   3'- -CGUCGCUuuauC-UGCG-GCGAAa-----GCCG- -5'
12397 3' -50.6 NC_003324.1 + 13195 0.66 0.922816
Target:  5'- uCGGCGA---AGAUGCUaaccgucagcgagGCUgcgUCGGCg -3'
miRNA:   3'- cGUCGCUuuaUCUGCGG-------------CGAa--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 14112 0.69 0.830831
Target:  5'- cCGGCGAGA-AGugGCUggaGUUUUCGcGCg -3'
miRNA:   3'- cGUCGCUUUaUCugCGG---CGAAAGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 14797 0.7 0.761379
Target:  5'- cGCGGCGAAGa--ACGCgGCcggcaUCGGCa -3'
miRNA:   3'- -CGUCGCUUUaucUGCGgCGaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 16112 0.76 0.424535
Target:  5'- uGCAGCGAGGUGGuccuGCGCagggCGCU-UCGGUa -3'
miRNA:   3'- -CGUCGCUUUAUC----UGCG----GCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 17186 0.78 0.34232
Target:  5'- gGC-GCGucuGUcGGACGCgGCUUUCGGCg -3'
miRNA:   3'- -CGuCGCuu-UA-UCUGCGgCGAAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 17364 0.66 0.929324
Target:  5'- uGCAGUGAGcgugcaugacGUGGuCGCacagGCgcUCGGCu -3'
miRNA:   3'- -CGUCGCUU----------UAUCuGCGg---CGaaAGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.