miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 55429 0.66 0.928747
Target:  5'- aGUGGCGucGUGuggaccgacgcauGACGCaCGCUgaUUUGGCg -3'
miRNA:   3'- -CGUCGCuuUAU-------------CUGCG-GCGA--AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 55044 0.7 0.771816
Target:  5'- -aGGCGGAcggcUGGGCuGCCGCga-CGGCg -3'
miRNA:   3'- cgUCGCUUu---AUCUG-CGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 54001 0.66 0.929898
Target:  5'- gGCGGCGAAGcgcacuUGCCGCgcugaugaucuugCGGCg -3'
miRNA:   3'- -CGUCGCUUUaucu--GCGGCGaaa----------GCCG- -5'
12397 3' -50.6 NC_003324.1 + 53729 0.69 0.820536
Target:  5'- aGCAGCGcguacagGAAccGGAgGCCGCUcaUGGCu -3'
miRNA:   3'- -CGUCGC-------UUUa-UCUgCGGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 53385 0.67 0.888072
Target:  5'- aCGGCGAccGAUAGuucuuucucaaGCCGCgacCGGCg -3'
miRNA:   3'- cGUCGCU--UUAUCug---------CGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 52434 0.66 0.929324
Target:  5'- uGCAgGCGAGA-AGAgUGCUGCgugcaaUUCGGUg -3'
miRNA:   3'- -CGU-CGCUUUaUCU-GCGGCGa-----AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 52152 0.67 0.896913
Target:  5'- aCAGCGA----GAUGCCGUUUUUuGCg -3'
miRNA:   3'- cGUCGCUuuauCUGCGGCGAAAGcCG- -5'
12397 3' -50.6 NC_003324.1 + 51534 0.69 0.821483
Target:  5'- cCGGUGGcuUGGGCuGCCGuCUUgCGGCa -3'
miRNA:   3'- cGUCGCUuuAUCUG-CGGC-GAAaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 51421 0.66 0.929898
Target:  5'- cGCGGCGAccggauuugggugcGcgAGaACGCUGCUguccgucaccagagUUGGCa -3'
miRNA:   3'- -CGUCGCU--------------UuaUC-UGCGGCGAa-------------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 50907 0.69 0.790212
Target:  5'- uGCAGCGAuGUGGGCGuuGaaccacuccUGGCa -3'
miRNA:   3'- -CGUCGCUuUAUCUGCggCgaaa-----GCCG- -5'
12397 3' -50.6 NC_003324.1 + 50021 0.66 0.917228
Target:  5'- gGCaAGCGcu---GGgGCCGCUgaUCGGCu -3'
miRNA:   3'- -CG-UCGCuuuauCUgCGGCGAa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 49883 0.68 0.848854
Target:  5'- cCGGCGGGcaaAGAuCGCUGCg-UCGGCg -3'
miRNA:   3'- cGUCGCUUua-UCU-GCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 49784 0.67 0.903971
Target:  5'- gGCAGCGGGAUAagUGCCGU---CGGg -3'
miRNA:   3'- -CGUCGCUUUAUcuGCGGCGaaaGCCg -5'
12397 3' -50.6 NC_003324.1 + 49170 1.14 0.001606
Target:  5'- gGCAGCGAAAUAGACGCCGCUUUCGGCc -3'
miRNA:   3'- -CGUCGCUUUAUCUGCGGCGAAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48813 0.66 0.917228
Target:  5'- uGCAGCcugcu-GGCGCCGaCgcggUUGGCg -3'
miRNA:   3'- -CGUCGcuuuauCUGCGGC-Gaa--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48704 0.69 0.789205
Target:  5'- uGCGGCGGAGccggaugcGGGCGCCGacCUgcgugucgauugggUUCGGCu -3'
miRNA:   3'- -CGUCGCUUUa-------UCUGCGGC--GA--------------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48703 0.66 0.945284
Target:  5'- aGCAGguccagaaauaCGAAAaGGGCGCCaaccGCg-UCGGCg -3'
miRNA:   3'- -CGUC-----------GCUUUaUCUGCGG----CGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48553 0.66 0.945284
Target:  5'- cGCAGCGcuc--GAUGuCUGCUUUgaUGGCg -3'
miRNA:   3'- -CGUCGCuuuauCUGC-GGCGAAA--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 48469 0.69 0.830831
Target:  5'- cGCAGcCGAGcagGUAGGCGCCaagggcaacuGCgagcCGGCu -3'
miRNA:   3'- -CGUC-GCUU---UAUCUGCGG----------CGaaa-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 48166 0.66 0.934934
Target:  5'- uGCAGCGAc---GugGUCcCUaUCGGCc -3'
miRNA:   3'- -CGUCGCUuuauCugCGGcGAaAGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.