miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 52152 0.67 0.896913
Target:  5'- aCAGCGA----GAUGCCGUUUUUuGCg -3'
miRNA:   3'- cGUCGCUuuauCUGCGGCGAAAGcCG- -5'
12397 3' -50.6 NC_003324.1 + 51534 0.69 0.821483
Target:  5'- cCGGUGGcuUGGGCuGCCGuCUUgCGGCa -3'
miRNA:   3'- cGUCGCUuuAUCUG-CGGC-GAAaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 14112 0.69 0.830831
Target:  5'- cCGGCGAGA-AGugGCUggaGUUUUCGcGCg -3'
miRNA:   3'- cGUCGCUUUaUCugCGG---CGAAAGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 35043 0.68 0.848854
Target:  5'- aGCAGCGGccuGAUcGuCGUCGCUgcCGGUu -3'
miRNA:   3'- -CGUCGCU---UUAuCuGCGGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 45929 0.68 0.848854
Target:  5'- -aAGCGAAGcaagcGACGCCGCa---GGCu -3'
miRNA:   3'- cgUCGCUUUau---CUGCGGCGaaagCCG- -5'
12397 3' -50.6 NC_003324.1 + 49883 0.68 0.848854
Target:  5'- cCGGCGGGcaaAGAuCGCUGCg-UCGGCg -3'
miRNA:   3'- cGUCGCUUua-UCU-GCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 44816 0.68 0.865919
Target:  5'- uGCGGgGAGAaggGGGCGgCGUcaUUGGCg -3'
miRNA:   3'- -CGUCgCUUUa--UCUGCgGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 20672 0.68 0.865919
Target:  5'- gGCGGCGAugcuUGGAaGCCGuCUcUUCGaGCu -3'
miRNA:   3'- -CGUCGCUuu--AUCUgCGGC-GA-AAGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 24144 0.68 0.874071
Target:  5'- uGCGGCcAAGUcggaucaucacGGAagaGCCGCUUgUUGGCg -3'
miRNA:   3'- -CGUCGcUUUA-----------UCUg--CGGCGAA-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 53729 0.69 0.820536
Target:  5'- aGCAGCGcguacagGAAccGGAgGCCGCUcaUGGCu -3'
miRNA:   3'- -CGUCGC-------UUUa-UCUgCGGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 34388 0.69 0.811925
Target:  5'- -aAGCGAucgaGAUAGGCgaacucgccGCCGUccUCGGCa -3'
miRNA:   3'- cgUCGCU----UUAUCUG---------CGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 5392 0.69 0.801182
Target:  5'- aGCGGCGAuuucggcucggaaGAUGG-CGcCCGCaccugCGGCg -3'
miRNA:   3'- -CGUCGCU-------------UUAUCuGC-GGCGaaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 25682 0.78 0.350866
Target:  5'- cGCGGCGAGGUGGACGCaGUaUUcCGGUc -3'
miRNA:   3'- -CGUCGCUUUAUCUGCGgCGaAA-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 2676 0.77 0.386545
Target:  5'- cCAGCGc---GGugGCCGCU-UCGGCa -3'
miRNA:   3'- cGUCGCuuuaUCugCGGCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 16112 0.76 0.424535
Target:  5'- uGCAGCGAGGUGGuccuGCGCagggCGCU-UCGGUa -3'
miRNA:   3'- -CGUCGCUUUAUC----UGCG----GCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 18129 0.72 0.628751
Target:  5'- cGCAGCGgcGUGuauucGACGCCGgUUUCGcCg -3'
miRNA:   3'- -CGUCGCuuUAU-----CUGCGGCgAAAGCcG- -5'
12397 3' -50.6 NC_003324.1 + 3807 0.71 0.685097
Target:  5'- uCAGCGG---GGAUuaCGCUUUUGGCg -3'
miRNA:   3'- cGUCGCUuuaUCUGcgGCGAAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 1173 0.7 0.761379
Target:  5'- aGCcGCGAAAgAGACGCUGaaaucCGGCc -3'
miRNA:   3'- -CGuCGCUUUaUCUGCGGCgaaa-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 14797 0.7 0.761379
Target:  5'- cGCGGCGAAGa--ACGCgGCcggcaUCGGCa -3'
miRNA:   3'- -CGUCGCUUUaucUGCGgCGaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 55044 0.7 0.771816
Target:  5'- -aGGCGGAcggcUGGGCuGCCGCga-CGGCg -3'
miRNA:   3'- cgUCGCUUu---AUCUG-CGGCGaaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.