miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 18129 0.72 0.628751
Target:  5'- cGCAGCGgcGUGuauucGACGCCGgUUUCGcCg -3'
miRNA:   3'- -CGUCGCuuUAU-----CUGCGGCgAAAGCcG- -5'
12397 3' -50.6 NC_003324.1 + 18368 0.68 0.848854
Target:  5'- gGCAGCGAuu---GC-CCGCgcgUCGGCc -3'
miRNA:   3'- -CGUCGCUuuaucUGcGGCGaa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 18802 0.67 0.903971
Target:  5'- uGC-GCGGGuccauGGCGCgGCgaaggUCGGCg -3'
miRNA:   3'- -CGuCGCUUuau--CUGCGgCGaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 18992 0.66 0.923422
Target:  5'- aGCGG-GAAAUAcGGCgGCUGCacgCGGCu -3'
miRNA:   3'- -CGUCgCUUUAU-CUG-CGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 19081 0.67 0.903971
Target:  5'- cGUcGCGcuacGGUAGGCGCuCGCggcauccucUUCGGCa -3'
miRNA:   3'- -CGuCGCu---UUAUCUGCG-GCGa--------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 19374 0.67 0.910744
Target:  5'- uCAGCGAugGAUcGACGCCgGCgcgcgUCGcGCc -3'
miRNA:   3'- cGUCGCU--UUAuCUGCGG-CGaa---AGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 19600 0.73 0.617447
Target:  5'- aGCGGCu-GAUGGACGCCuuccgCGGCa -3'
miRNA:   3'- -CGUCGcuUUAUCUGCGGcgaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 20610 0.77 0.395831
Target:  5'- cCGGCGcuGAUGGGCGCuUGCggUCGGCg -3'
miRNA:   3'- cGUCGCu-UUAUCUGCG-GCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 20672 0.68 0.865919
Target:  5'- gGCGGCGAugcuUGGAaGCCGuCUcUUCGaGCu -3'
miRNA:   3'- -CGUCGCUuu--AUCUgCGGC-GA-AAGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 20739 0.66 0.939735
Target:  5'- -gAGCGc---AGGCGCCuGCUUcucgaugUCGGCc -3'
miRNA:   3'- cgUCGCuuuaUCUGCGG-CGAA-------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 21164 0.67 0.903971
Target:  5'- cGCAGCac-----GCGCCGCgg-CGGCc -3'
miRNA:   3'- -CGUCGcuuuaucUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 21263 0.66 0.929324
Target:  5'- -gAGCGGAuugcccGACgcuGCCGCUUucaucUCGGCc -3'
miRNA:   3'- cgUCGCUUuau---CUG---CGGCGAA-----AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 21311 0.66 0.944794
Target:  5'- ----aGAGAUGGAaacgcgcCGUCGCcUUCGGCa -3'
miRNA:   3'- cgucgCUUUAUCU-------GCGGCGaAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 22261 0.66 0.940253
Target:  5'- cGCGGCGAGcugcgccuuGAUGUCGUcgUUGGUg -3'
miRNA:   3'- -CGUCGCUUuau------CUGCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 22331 0.68 0.865919
Target:  5'- cGCAGCu-------CGCCGCgaUCGGCa -3'
miRNA:   3'- -CGUCGcuuuaucuGCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 24144 0.68 0.874071
Target:  5'- uGCGGCcAAGUcggaucaucacGGAagaGCCGCUUgUUGGCg -3'
miRNA:   3'- -CGUCGcUUUA-----------UCUg--CGGCGAA-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 24825 0.66 0.934934
Target:  5'- gGCAgGCGGAuc--GCGCCGacaaggUCGGCc -3'
miRNA:   3'- -CGU-CGCUUuaucUGCGGCgaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 25591 0.66 0.940253
Target:  5'- gGCGGUGAugacAUAGucugucggcCGCUGCUgcgcCGGCa -3'
miRNA:   3'- -CGUCGCUu---UAUCu--------GCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 25682 0.78 0.350866
Target:  5'- cGCGGCGAGGUGGACGCaGUaUUcCGGUc -3'
miRNA:   3'- -CGUCGCUUUAUCUGCGgCGaAA-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 27065 0.66 0.933835
Target:  5'- cGCGGCGuuaccguuGugGCCGgug-CGGCu -3'
miRNA:   3'- -CGUCGCuuuau---CugCGGCgaaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.