miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 28976 0.67 0.889574
Target:  5'- cGCAGCGAAGgacGAgGCCgGCcagUGGUg -3'
miRNA:   3'- -CGUCGCUUUau-CUgCGG-CGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 29073 0.71 0.718355
Target:  5'- -aAGCGAAAUcGACGCUGC---CGGUg -3'
miRNA:   3'- cgUCGCUUUAuCUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30126 0.66 0.934934
Target:  5'- gGCGGCGuGAUGGGCGgCgGCaugggUGGUg -3'
miRNA:   3'- -CGUCGCuUUAUCUGC-GgCGaaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 30314 0.7 0.740097
Target:  5'- uCGGCGGu---GGCGUCGC--UCGGCg -3'
miRNA:   3'- cGUCGCUuuauCUGCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30362 0.68 0.848854
Target:  5'- uCGGCGGcuUGGGCGaCCGUgccUUGGCc -3'
miRNA:   3'- cGUCGCUuuAUCUGC-GGCGaa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30597 0.66 0.934934
Target:  5'- cGCgAGCGA---GGAUGCCGCc--CGGa -3'
miRNA:   3'- -CG-UCGCUuuaUCUGCGGCGaaaGCCg -5'
12397 3' -50.6 NC_003324.1 + 30597 0.68 0.860905
Target:  5'- gGCAGCGAAGgucgccacggucgcAGGCGCaGUUUccgagggccugcUCGGCg -3'
miRNA:   3'- -CGUCGCUUUa-------------UCUGCGgCGAA------------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30633 0.66 0.940253
Target:  5'- cGCcGCuGGAGUAGagcagcGCGUCGCag-CGGCa -3'
miRNA:   3'- -CGuCG-CUUUAUC------UGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 31101 0.66 0.934934
Target:  5'- uGCGGC--AAU--GCGCUGCUgcUCGGCu -3'
miRNA:   3'- -CGUCGcuUUAucUGCGGCGAa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 32155 0.69 0.831753
Target:  5'- cGCAGCGAGGccgaagagccauuuGACGCCuuGC--UCGGCc -3'
miRNA:   3'- -CGUCGCUUUau------------CUGCGG--CGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 32397 0.68 0.874071
Target:  5'- uGCAGgauccgGAGAUGcGGCGCCGCgcagaGGCc -3'
miRNA:   3'- -CGUCg-----CUUUAU-CUGCGGCGaaag-CCG- -5'
12397 3' -50.6 NC_003324.1 + 33286 0.67 0.881957
Target:  5'- aCAGCGAcaaGGACGCCuucuacaagGCUUUCGa- -3'
miRNA:   3'- cGUCGCUuuaUCUGCGG---------CGAAAGCcg -5'
12397 3' -50.6 NC_003324.1 + 33408 0.67 0.910744
Target:  5'- cGCuuGCGAu---GAacgcccgaGCCGCUUcaUCGGCg -3'
miRNA:   3'- -CGu-CGCUuuauCUg-------CGGCGAA--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 33575 0.74 0.539238
Target:  5'- gGCGGCGGGAUcGAgGaCCGCauuguuacgUUCGGCg -3'
miRNA:   3'- -CGUCGCUUUAuCUgC-GGCGa--------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 33842 0.66 0.934934
Target:  5'- cGCGGUGAcugggAGACG-UGCUgugaCGGCg -3'
miRNA:   3'- -CGUCGCUuua--UCUGCgGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 34388 0.69 0.811925
Target:  5'- -aAGCGAucgaGAUAGGCgaacucgccGCCGUccUCGGCa -3'
miRNA:   3'- cgUCGCU----UUAUCUG---------CGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 34618 0.7 0.740097
Target:  5'- cGCAGCuccggGAGGcgcUGGGCGauuCCGCUggCGGCa -3'
miRNA:   3'- -CGUCG-----CUUU---AUCUGC---GGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 35043 0.68 0.848854
Target:  5'- aGCAGCGGccuGAUcGuCGUCGCUgcCGGUu -3'
miRNA:   3'- -CGUCGCU---UUAuCuGCGGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 35126 0.68 0.847976
Target:  5'- gGCAGCGAcgacGAUcAGGCcgcugcugccgccGCCGCUgcugcugcugCGGCa -3'
miRNA:   3'- -CGUCGCU----UUA-UCUG-------------CGGCGAaa--------GCCG- -5'
12397 3' -50.6 NC_003324.1 + 39379 0.66 0.917228
Target:  5'- cCGGCGAAGcAGcuuGCGCUGCggcucgUUgGGCu -3'
miRNA:   3'- cGUCGCUUUaUC---UGCGGCGa-----AAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.