miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 19374 0.67 0.910744
Target:  5'- uCAGCGAugGAUcGACGCCgGCgcgcgUCGcGCc -3'
miRNA:   3'- cGUCGCU--UUAuCUGCGG-CGaa---AGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 18802 0.67 0.903971
Target:  5'- uGC-GCGGGuccauGGCGCgGCgaaggUCGGCg -3'
miRNA:   3'- -CGuCGCUUuau--CUGCGgCGaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 11566 0.67 0.903971
Target:  5'- -gGGCGAGcagccGAUGCUGCUcccgCGGCu -3'
miRNA:   3'- cgUCGCUUuau--CUGCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 3153 0.68 0.857511
Target:  5'- -gAGCGGGA---GCGCCGUg--CGGCc -3'
miRNA:   3'- cgUCGCUUUaucUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30597 0.68 0.860905
Target:  5'- gGCAGCGAAGgucgccacggucgcAGGCGCaGUUUccgagggccugcUCGGCg -3'
miRNA:   3'- -CGUCGCUUUa-------------UCUGCGgCGAA------------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30362 0.68 0.848854
Target:  5'- uCGGCGGcuUGGGCGaCCGUgccUUGGCc -3'
miRNA:   3'- cGUCGCUuuAUCUGC-GGCGaa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 22331 0.68 0.865919
Target:  5'- cGCAGCu-------CGCCGCgaUCGGCa -3'
miRNA:   3'- -CGUCGcuuuaucuGCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 32397 0.68 0.874071
Target:  5'- uGCAGgauccgGAGAUGcGGCGCCGCgcagaGGCc -3'
miRNA:   3'- -CGUCg-----CUUUAU-CUGCGGCGaaag-CCG- -5'
12397 3' -50.6 NC_003324.1 + 42997 0.68 0.848854
Target:  5'- cGCAGUGAccgccAAUGGucgcccCGCCGCUgggucguucUCGGUc -3'
miRNA:   3'- -CGUCGCU-----UUAUCu-----GCGGCGAa--------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 20672 0.68 0.865919
Target:  5'- gGCGGCGAugcuUGGAaGCCGuCUcUUCGaGCu -3'
miRNA:   3'- -CGUCGCUuu--AUCUgCGGC-GA-AAGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 18368 0.68 0.848854
Target:  5'- gGCAGCGAuu---GC-CCGCgcgUCGGCc -3'
miRNA:   3'- -CGUCGCUuuaucUGcGGCGaa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 35126 0.68 0.847976
Target:  5'- gGCAGCGAcgacGAUcAGGCcgcugcugccgccGCCGCUgcugcugcugCGGCa -3'
miRNA:   3'- -CGUCGCU----UUA-UCUG-------------CGGCGAaa--------GCCG- -5'
12397 3' -50.6 NC_003324.1 + 44816 0.68 0.865919
Target:  5'- uGCGGgGAGAaggGGGCGgCGUcaUUGGCg -3'
miRNA:   3'- -CGUCgCUUUa--UCUGCgGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 49883 0.68 0.848854
Target:  5'- cCGGCGGGcaaAGAuCGCUGCg-UCGGCg -3'
miRNA:   3'- cGUCGCUUua-UCU-GCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 24144 0.68 0.874071
Target:  5'- uGCGGCcAAGUcggaucaucacGGAagaGCCGCUUgUUGGCg -3'
miRNA:   3'- -CGUCGcUUUA-----------UCUg--CGGCGAA-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 45929 0.68 0.848854
Target:  5'- -aAGCGAAGcaagcGACGCCGCa---GGCu -3'
miRNA:   3'- cgUCGCUUUau---CUGCGGCGaaagCCG- -5'
12397 3' -50.6 NC_003324.1 + 35043 0.68 0.848854
Target:  5'- aGCAGCGGccuGAUcGuCGUCGCUgcCGGUu -3'
miRNA:   3'- -CGUCGCU---UUAuCuGCGGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 14112 0.69 0.830831
Target:  5'- cCGGCGAGA-AGugGCUggaGUUUUCGcGCg -3'
miRNA:   3'- cGUCGCUUUaUCugCGG---CGAAAGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 53729 0.69 0.820536
Target:  5'- aGCAGCGcguacagGAAccGGAgGCCGCUcaUGGCu -3'
miRNA:   3'- -CGUCGC-------UUUa-UCUgCGGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 51534 0.69 0.821483
Target:  5'- cCGGUGGcuUGGGCuGCCGuCUUgCGGCa -3'
miRNA:   3'- cGUCGCUuuAUCUG-CGGC-GAAaGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.