miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 44816 0.68 0.865919
Target:  5'- uGCGGgGAGAaggGGGCGgCGUcaUUGGCg -3'
miRNA:   3'- -CGUCgCUUUa--UCUGCgGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 49883 0.68 0.848854
Target:  5'- cCGGCGGGcaaAGAuCGCUGCg-UCGGCg -3'
miRNA:   3'- cGUCGCUUua-UCU-GCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 45929 0.68 0.848854
Target:  5'- -aAGCGAAGcaagcGACGCCGCa---GGCu -3'
miRNA:   3'- cgUCGCUUUau---CUGCGGCGaaagCCG- -5'
12397 3' -50.6 NC_003324.1 + 35043 0.68 0.848854
Target:  5'- aGCAGCGGccuGAUcGuCGUCGCUgcCGGUu -3'
miRNA:   3'- -CGUCGCU---UUAuCuGCGGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 14112 0.69 0.830831
Target:  5'- cCGGCGAGA-AGugGCUggaGUUUUCGcGCg -3'
miRNA:   3'- cGUCGCUUUaUCugCGG---CGAAAGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 3153 0.68 0.857511
Target:  5'- -gAGCGGGA---GCGCCGUg--CGGCc -3'
miRNA:   3'- cgUCGCUUUaucUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30362 0.68 0.848854
Target:  5'- uCGGCGGcuUGGGCGaCCGUgccUUGGCc -3'
miRNA:   3'- cGUCGCUuuAUCUGC-GGCGaa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 18368 0.68 0.848854
Target:  5'- gGCAGCGAuu---GC-CCGCgcgUCGGCc -3'
miRNA:   3'- -CGUCGCUuuaucUGcGGCGaa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 42997 0.68 0.848854
Target:  5'- cGCAGUGAccgccAAUGGucgcccCGCCGCUgggucguucUCGGUc -3'
miRNA:   3'- -CGUCGCU-----UUAUCu-----GCGGCGAa--------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 35126 0.68 0.847976
Target:  5'- gGCAGCGAcgacGAUcAGGCcgcugcugccgccGCCGCUgcugcugcugCGGCa -3'
miRNA:   3'- -CGUCGCU----UUA-UCUG-------------CGGCGAaa--------GCCG- -5'
12397 3' -50.6 NC_003324.1 + 32155 0.69 0.831753
Target:  5'- cGCAGCGAGGccgaagagccauuuGACGCCuuGC--UCGGCc -3'
miRNA:   3'- -CGUCGCUUUau------------CUGCGG--CGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48469 0.69 0.830831
Target:  5'- cGCAGcCGAGcagGUAGGCGCCaagggcaacuGCgagcCGGCu -3'
miRNA:   3'- -CGUC-GCUU---UAUCUGCGG----------CGaaa-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 50907 0.69 0.790212
Target:  5'- uGCAGCGAuGUGGGCGuuGaaccacuccUGGCa -3'
miRNA:   3'- -CGUCGCUuUAUCUGCggCgaaa-----GCCG- -5'
12397 3' -50.6 NC_003324.1 + 48704 0.69 0.789205
Target:  5'- uGCGGCGGAGccggaugcGGGCGCCGacCUgcgugucgauugggUUCGGCu -3'
miRNA:   3'- -CGUCGCUUUa-------UCUGCGGC--GA--------------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 6233 0.7 0.761379
Target:  5'- gGCAGCGcauuccAGGCGgcgcgggucaguCCGCUaUCGGCg -3'
miRNA:   3'- -CGUCGCuuua--UCUGC------------GGCGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 43355 0.7 0.750802
Target:  5'- uCGGCGAAAUccuugAGAaacUGCCGCUgccaGGCg -3'
miRNA:   3'- cGUCGCUUUA-----UCU---GCGGCGAaag-CCG- -5'
12397 3' -50.6 NC_003324.1 + 30314 0.7 0.740097
Target:  5'- uCGGCGGu---GGCGUCGC--UCGGCg -3'
miRNA:   3'- cGUCGCUuuauCUGCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 34618 0.7 0.740097
Target:  5'- cGCAGCuccggGAGGcgcUGGGCGauuCCGCUggCGGCa -3'
miRNA:   3'- -CGUCG-----CUUU---AUCUGC---GGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 29073 0.71 0.718355
Target:  5'- -aAGCGAAAUcGACGCUGC---CGGUg -3'
miRNA:   3'- cgUCGCUUUAuCUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 19600 0.73 0.617447
Target:  5'- aGCGGCu-GAUGGACGCCuuccgCGGCa -3'
miRNA:   3'- -CGUCGcuUUAUCUGCGGcgaaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.