miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 45929 0.68 0.848854
Target:  5'- -aAGCGAAGcaagcGACGCCGCa---GGCu -3'
miRNA:   3'- cgUCGCUUUau---CUGCGGCGaaagCCG- -5'
12397 3' -50.6 NC_003324.1 + 35043 0.68 0.848854
Target:  5'- aGCAGCGGccuGAUcGuCGUCGCUgcCGGUu -3'
miRNA:   3'- -CGUCGCU---UUAuCuGCGGCGAaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 20672 0.68 0.865919
Target:  5'- gGCGGCGAugcuUGGAaGCCGuCUcUUCGaGCu -3'
miRNA:   3'- -CGUCGCUuu--AUCUgCGGC-GA-AAGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 21164 0.67 0.903971
Target:  5'- cGCAGCac-----GCGCCGCgg-CGGCc -3'
miRNA:   3'- -CGUCGcuuuaucUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 49784 0.67 0.903971
Target:  5'- gGCAGCGGGAUAagUGCCGU---CGGg -3'
miRNA:   3'- -CGUCGCUUUAUcuGCGGCGaaaGCCg -5'
12397 3' -50.6 NC_003324.1 + 28976 0.67 0.889574
Target:  5'- cGCAGCGAAGgacGAgGCCgGCcagUGGUg -3'
miRNA:   3'- -CGUCGCUUUau-CUgCGG-CGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 53385 0.67 0.888072
Target:  5'- aCGGCGAccGAUAGuucuuucucaaGCCGCgacCGGCg -3'
miRNA:   3'- cGUCGCU--UUAUCug---------CGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 33286 0.67 0.881957
Target:  5'- aCAGCGAcaaGGACGCCuucuacaagGCUUUCGa- -3'
miRNA:   3'- cGUCGCUuuaUCUGCGG---------CGAAAGCcg -5'
12397 3' -50.6 NC_003324.1 + 33408 0.67 0.910744
Target:  5'- cGCuuGCGAu---GAacgcccgaGCCGCUUcaUCGGCg -3'
miRNA:   3'- -CGu-CGCUuuauCUg-------CGGCGAA--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 19374 0.67 0.910744
Target:  5'- uCAGCGAugGAUcGACGCCgGCgcgcgUCGcGCc -3'
miRNA:   3'- cGUCGCU--UUAuCUGCGG-CGaa---AGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 19081 0.67 0.903971
Target:  5'- cGUcGCGcuacGGUAGGCGCuCGCggcauccucUUCGGCa -3'
miRNA:   3'- -CGuCGCu---UUAUCUGCG-GCGa--------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 18802 0.67 0.903971
Target:  5'- uGC-GCGGGuccauGGCGCgGCgaaggUCGGCg -3'
miRNA:   3'- -CGuCGCUUuau--CUGCGgCGaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 11566 0.67 0.903971
Target:  5'- -gGGCGAGcagccGAUGCUGCUcccgCGGCu -3'
miRNA:   3'- cgUCGCUUuau--CUGCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 52152 0.67 0.896913
Target:  5'- aCAGCGA----GAUGCCGUUUUUuGCg -3'
miRNA:   3'- cGUCGCUuuauCUGCGGCGAAAGcCG- -5'
12397 3' -50.6 NC_003324.1 + 25591 0.66 0.940253
Target:  5'- gGCGGUGAugacAUAGucugucggcCGCUGCUgcgcCGGCa -3'
miRNA:   3'- -CGUCGCUu---UAUCu--------GCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 24825 0.66 0.934934
Target:  5'- gGCAgGCGGAuc--GCGCCGacaaggUCGGCc -3'
miRNA:   3'- -CGU-CGCUUuaucUGCGGCgaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48166 0.66 0.934934
Target:  5'- uGCAGCGAc---GugGUCcCUaUCGGCc -3'
miRNA:   3'- -CGUCGCUuuauCugCGGcGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 27065 0.66 0.933835
Target:  5'- cGCGGCGuuaccguuGugGCCGgug-CGGCu -3'
miRNA:   3'- -CGUCGCuuuau---CugCGGCgaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30597 0.66 0.934934
Target:  5'- cGCgAGCGA---GGAUGCCGCc--CGGa -3'
miRNA:   3'- -CG-UCGCUuuaUCUGCGGCGaaaGCCg -5'
12397 3' -50.6 NC_003324.1 + 51421 0.66 0.929898
Target:  5'- cGCGGCGAccggauuugggugcGcgAGaACGCUGCUguccgucaccagagUUGGCa -3'
miRNA:   3'- -CGUCGCU--------------UuaUC-UGCGGCGAa-------------AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.