miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 17364 0.66 0.929324
Target:  5'- uGCAGUGAGcgugcaugacGUGGuCGCacagGCgcUCGGCu -3'
miRNA:   3'- -CGUCGCUU----------UAUCuGCGg---CGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 21263 0.66 0.929324
Target:  5'- -gAGCGGAuugcccGACgcuGCCGCUUucaucUCGGCc -3'
miRNA:   3'- cgUCGCUUuau---CUG---CGGCGAA-----AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 52434 0.66 0.929324
Target:  5'- uGCAgGCGAGA-AGAgUGCUGCgugcaaUUCGGUg -3'
miRNA:   3'- -CGU-CGCUUUaUCU-GCGGCGa-----AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 7747 0.66 0.929324
Target:  5'- uGCAGCGAcacAUAaACGCCaGC---CGGCa -3'
miRNA:   3'- -CGUCGCUu--UAUcUGCGG-CGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 55429 0.66 0.928747
Target:  5'- aGUGGCGucGUGuggaccgacgcauGACGCaCGCUgaUUUGGCg -3'
miRNA:   3'- -CGUCGCuuUAU-------------CUGCG-GCGA--AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 5220 0.66 0.927584
Target:  5'- cGCGGCGAccgcaauccgguucGAgcaucaguUGGcCGCCGCaccagCGGCa -3'
miRNA:   3'- -CGUCGCU--------------UU--------AUCuGCGGCGaaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 18992 0.66 0.923422
Target:  5'- aGCGG-GAAAUAcGGCgGCUGCacgCGGCu -3'
miRNA:   3'- -CGUCgCUUUAU-CUG-CGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 13195 0.66 0.922816
Target:  5'- uCGGCGA---AGAUGCUaaccgucagcgagGCUgcgUCGGCg -3'
miRNA:   3'- cGUCGCUuuaUCUGCGG-------------CGAa--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 40537 0.66 0.917228
Target:  5'- cGCGGCGAGAagccucUGGugGUuuuCGa--UCGGCa -3'
miRNA:   3'- -CGUCGCUUU------AUCugCG---GCgaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48813 0.66 0.917228
Target:  5'- uGCAGCcugcu-GGCGCCGaCgcggUUGGCg -3'
miRNA:   3'- -CGUCGcuuuauCUGCGGC-Gaa--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 39379 0.66 0.917228
Target:  5'- cCGGCGAAGcAGcuuGCGCUGCggcucgUUgGGCu -3'
miRNA:   3'- cGUCGCUUUaUC---UGCGGCGa-----AAgCCG- -5'
12397 3' -50.6 NC_003324.1 + 50021 0.66 0.917228
Target:  5'- gGCaAGCGcu---GGgGCCGCUgaUCGGCu -3'
miRNA:   3'- -CG-UCGCuuuauCUgCGGCGAa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 19374 0.67 0.910744
Target:  5'- uCAGCGAugGAUcGACGCCgGCgcgcgUCGcGCc -3'
miRNA:   3'- cGUCGCU--UUAuCUGCGG-CGaa---AGC-CG- -5'
12397 3' -50.6 NC_003324.1 + 33408 0.67 0.910744
Target:  5'- cGCuuGCGAu---GAacgcccgaGCCGCUUcaUCGGCg -3'
miRNA:   3'- -CGu-CGCUuuauCUg-------CGGCGAA--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 19081 0.67 0.903971
Target:  5'- cGUcGCGcuacGGUAGGCGCuCGCggcauccucUUCGGCa -3'
miRNA:   3'- -CGuCGCu---UUAUCUGCG-GCGa--------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 21164 0.67 0.903971
Target:  5'- cGCAGCac-----GCGCCGCgg-CGGCc -3'
miRNA:   3'- -CGUCGcuuuaucUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 49784 0.67 0.903971
Target:  5'- gGCAGCGGGAUAagUGCCGU---CGGg -3'
miRNA:   3'- -CGUCGCUUUAUcuGCGGCGaaaGCCg -5'
12397 3' -50.6 NC_003324.1 + 11566 0.67 0.903971
Target:  5'- -gGGCGAGcagccGAUGCUGCUcccgCGGCu -3'
miRNA:   3'- cgUCGCUUuau--CUGCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 18802 0.67 0.903971
Target:  5'- uGC-GCGGGuccauGGCGCgGCgaaggUCGGCg -3'
miRNA:   3'- -CGuCGCUUuau--CUGCGgCGaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 52152 0.67 0.896913
Target:  5'- aCAGCGA----GAUGCCGUUUUUuGCg -3'
miRNA:   3'- cGUCGCUuuauCUGCGGCGAAAGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.