miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 30362 0.68 0.848854
Target:  5'- uCGGCGGcuUGGGCGaCCGUgccUUGGCc -3'
miRNA:   3'- cGUCGCUuuAUCUGC-GGCGaa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 22331 0.68 0.865919
Target:  5'- cGCAGCu-------CGCCGCgaUCGGCa -3'
miRNA:   3'- -CGUCGcuuuaucuGCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 52434 0.66 0.929324
Target:  5'- uGCAgGCGAGA-AGAgUGCUGCgugcaaUUCGGUg -3'
miRNA:   3'- -CGU-CGCUUUaUCU-GCGGCGa-----AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 5177 0.66 0.940253
Target:  5'- aGCGGCGcAGAUcGucgaucGCGCCGCUUaagcuaUCaGGCc -3'
miRNA:   3'- -CGUCGC-UUUAuC------UGCGGCGAA------AG-CCG- -5'
12397 3' -50.6 NC_003324.1 + 29073 0.71 0.718355
Target:  5'- -aAGCGAAAUcGACGCUGC---CGGUg -3'
miRNA:   3'- cgUCGCUUUAuCUGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48469 0.69 0.830831
Target:  5'- cGCAGcCGAGcagGUAGGCGCCaagggcaacuGCgagcCGGCu -3'
miRNA:   3'- -CGUC-GCUU---UAUCUGCGG----------CGaaa-GCCG- -5'
12397 3' -50.6 NC_003324.1 + 33286 0.67 0.881957
Target:  5'- aCAGCGAcaaGGACGCCuucuacaagGCUUUCGa- -3'
miRNA:   3'- cGUCGCUuuaUCUGCGG---------CGAAAGCcg -5'
12397 3' -50.6 NC_003324.1 + 21311 0.66 0.944794
Target:  5'- ----aGAGAUGGAaacgcgcCGUCGCcUUCGGCa -3'
miRNA:   3'- cgucgCUUUAUCU-------GCGGCGaAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 32155 0.69 0.831753
Target:  5'- cGCAGCGAGGccgaagagccauuuGACGCCuuGC--UCGGCc -3'
miRNA:   3'- -CGUCGCUUUau------------CUGCGG--CGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 6675 0.66 0.945284
Target:  5'- aCGGCacauaGGACGCUGUgugccagUUCGGCu -3'
miRNA:   3'- cGUCGcuuuaUCUGCGGCGa------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 32397 0.68 0.874071
Target:  5'- uGCAGgauccgGAGAUGcGGCGCCGCgcagaGGCc -3'
miRNA:   3'- -CGUCg-----CUUUAU-CUGCGGCGaaag-CCG- -5'
12397 3' -50.6 NC_003324.1 + 18368 0.68 0.848854
Target:  5'- gGCAGCGAuu---GC-CCGCgcgUCGGCc -3'
miRNA:   3'- -CGUCGCUuuaucUGcGGCGaa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 49784 0.67 0.903971
Target:  5'- gGCAGCGGGAUAagUGCCGU---CGGg -3'
miRNA:   3'- -CGUCGCUUUAUcuGCGGCGaaaGCCg -5'
12397 3' -50.6 NC_003324.1 + 13195 0.66 0.922816
Target:  5'- uCGGCGA---AGAUGCUaaccgucagcgagGCUgcgUCGGCg -3'
miRNA:   3'- cGUCGCUuuaUCUGCGG-------------CGAa--AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 54001 0.66 0.929898
Target:  5'- gGCGGCGAAGcgcacuUGCCGCgcugaugaucuugCGGCg -3'
miRNA:   3'- -CGUCGCUUUaucu--GCGGCGaaa----------GCCG- -5'
12397 3' -50.6 NC_003324.1 + 30633 0.66 0.940253
Target:  5'- cGCcGCuGGAGUAGagcagcGCGUCGCag-CGGCa -3'
miRNA:   3'- -CGuCG-CUUUAUC------UGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 5428 0.74 0.513135
Target:  5'- uCAGCGucg-GGGCGCCGUUggugucgagaucgUCGGCg -3'
miRNA:   3'- cGUCGCuuuaUCUGCGGCGAa------------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 19600 0.73 0.617447
Target:  5'- aGCGGCu-GAUGGACGCCuuccgCGGCa -3'
miRNA:   3'- -CGUCGcuUUAUCUGCGGcgaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 43355 0.7 0.750802
Target:  5'- uCGGCGAAAUccuugAGAaacUGCCGCUgccaGGCg -3'
miRNA:   3'- cGUCGCUUUA-----UCU---GCGGCGAaag-CCG- -5'
12397 3' -50.6 NC_003324.1 + 50907 0.69 0.790212
Target:  5'- uGCAGCGAuGUGGGCGuuGaaccacuccUGGCa -3'
miRNA:   3'- -CGUCGCUuUAUCUGCggCgaaa-----GCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.