miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12400 3' -61.3 NC_003324.1 + 50516 1.09 0.000284
Target:  5'- gCCCUGCGAGCUGCACCACGCCCAGCGc -3'
miRNA:   3'- -GGGACGCUCGACGUGGUGCGGGUCGC- -5'
12400 3' -61.3 NC_003324.1 + 42725 0.76 0.084749
Target:  5'- gCCUUGCu-GUUGCAgauCCGCGCCCGGCGc -3'
miRNA:   3'- -GGGACGcuCGACGU---GGUGCGGGUCGC- -5'
12400 3' -61.3 NC_003324.1 + 4535 0.75 0.099862
Target:  5'- gCCUGaauCGGGUUGCAgCAUGCCCGGCc -3'
miRNA:   3'- gGGAC---GCUCGACGUgGUGCGGGUCGc -5'
12400 3' -61.3 NC_003324.1 + 43196 0.72 0.161727
Target:  5'- aCCUGCGGGacuuugGCAUUAUGCCCgcuGGCGg -3'
miRNA:   3'- gGGACGCUCga----CGUGGUGCGGG---UCGC- -5'
12400 3' -61.3 NC_003324.1 + 40319 0.7 0.220412
Target:  5'- gCCCUGCuuAGUUGCACCcuucgGCGCUgCAGCa -3'
miRNA:   3'- -GGGACGc-UCGACGUGG-----UGCGG-GUCGc -5'
12400 3' -61.3 NC_003324.1 + 27593 0.69 0.249814
Target:  5'- aUUUGCGAGgguuuUUGCugCGCGUCCGGCu -3'
miRNA:   3'- gGGACGCUC-----GACGugGUGCGGGUCGc -5'
12400 3' -61.3 NC_003324.1 + 41611 0.69 0.262453
Target:  5'- cCUCUGCGAGa---GCCACGCCCAcCa -3'
miRNA:   3'- -GGGACGCUCgacgUGGUGCGGGUcGc -5'
12400 3' -61.3 NC_003324.1 + 3151 0.69 0.268964
Target:  5'- cCCCUugGCGAGCUccgaaagcaccgGCACCGCGCCg---- -3'
miRNA:   3'- -GGGA--CGCUCGA------------CGUGGUGCGGgucgc -5'
12400 3' -61.3 NC_003324.1 + 30545 0.69 0.275606
Target:  5'- gCCgCUGCGAcgcGCUGCuCUAC-UCCAGCGg -3'
miRNA:   3'- -GG-GACGCU---CGACGuGGUGcGGGUCGC- -5'
12400 3' -61.3 NC_003324.1 + 25258 0.68 0.303485
Target:  5'- gCCUgGUGAGCUGCGCgacgGCGCCC-GUa -3'
miRNA:   3'- gGGA-CGCUCGACGUGg---UGCGGGuCGc -5'
12400 3' -61.3 NC_003324.1 + 45770 0.68 0.318217
Target:  5'- gCCCUGCucacgccucgccGAGCcccUGCAUCuauUGCCCAGgGg -3'
miRNA:   3'- -GGGACG------------CUCG---ACGUGGu--GCGGGUCgC- -5'
12400 3' -61.3 NC_003324.1 + 30670 0.68 0.318217
Target:  5'- -gCUGCGcGGaucGCGCCACGCCgGGCc -3'
miRNA:   3'- ggGACGC-UCga-CGUGGUGCGGgUCGc -5'
12400 3' -61.3 NC_003324.1 + 31097 0.68 0.325783
Target:  5'- uCCUUGCG-GCaaUGCGCUGCuGCUCGGCu -3'
miRNA:   3'- -GGGACGCuCG--ACGUGGUG-CGGGUCGc -5'
12400 3' -61.3 NC_003324.1 + 49334 0.68 0.333482
Target:  5'- aUCUGCacguGCUGUGCgGCGCCaaCAGCGg -3'
miRNA:   3'- gGGACGcu--CGACGUGgUGCGG--GUCGC- -5'
12400 3' -61.3 NC_003324.1 + 2293 0.68 0.333482
Target:  5'- cCCCUGCGGGCggGCugCuuccugaauAUGCCUuGCu -3'
miRNA:   3'- -GGGACGCUCGa-CGugG---------UGCGGGuCGc -5'
12400 3' -61.3 NC_003324.1 + 42880 0.67 0.349275
Target:  5'- gCCC-GCGAGgauCUGCgACCgagaACGaCCCAGCGc -3'
miRNA:   3'- -GGGaCGCUC---GACG-UGG----UGC-GGGUCGC- -5'
12400 3' -61.3 NC_003324.1 + 53804 0.67 0.35737
Target:  5'- uUCUGgugGGGCUGCACCAaggucuCGCCgGGCu -3'
miRNA:   3'- gGGACg--CUCGACGUGGU------GCGGgUCGc -5'
12400 3' -61.3 NC_003324.1 + 34621 0.67 0.365595
Target:  5'- gCUCUGC-AGUUugcGCACCucgGCGUCCAGCa -3'
miRNA:   3'- -GGGACGcUCGA---CGUGG---UGCGGGUCGc -5'
12400 3' -61.3 NC_003324.1 + 35806 0.67 0.37395
Target:  5'- aUCUGgGGGUUGaccggaGCCAgcuUGCCCAGCa -3'
miRNA:   3'- gGGACgCUCGACg-----UGGU---GCGGGUCGc -5'
12400 3' -61.3 NC_003324.1 + 30338 0.67 0.37395
Target:  5'- gCCUGCGAuGCUGCAUCcuccgucagaGCCUugauGGCGu -3'
miRNA:   3'- gGGACGCU-CGACGUGGug--------CGGG----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.