Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 40319 | 0.7 | 0.220412 |
Target: 5'- gCCCUGCuuAGUUGCACCcuucgGCGCUgCAGCa -3' miRNA: 3'- -GGGACGc-UCGACGUGG-----UGCGG-GUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 34621 | 0.67 | 0.365595 |
Target: 5'- gCUCUGC-AGUUugcGCACCucgGCGUCCAGCa -3' miRNA: 3'- -GGGACGcUCGA---CGUGG---UGCGGGUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 30338 | 0.67 | 0.37395 |
Target: 5'- gCCUGCGAuGCUGCAUCcuccgucagaGCCUugauGGCGu -3' miRNA: 3'- gGGACGCU-CGACGUGGug--------CGGG----UCGC- -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 35806 | 0.67 | 0.37395 |
Target: 5'- aUCUGgGGGUUGaccggaGCCAgcuUGCCCAGCa -3' miRNA: 3'- gGGACgCUCGACg-----UGGU---GCGGGUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 35551 | 0.67 | 0.379875 |
Target: 5'- aUCUGCGAGCggaucugcaaggccUGCGCCuGCGUCUucuGCGc -3' miRNA: 3'- gGGACGCUCG--------------ACGUGG-UGCGGGu--CGC- -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 16124 | 0.66 | 0.388448 |
Target: 5'- gUCCUGCGcagggcgcuucgguAGCggGgGCCGCGCCaGGCa -3' miRNA: 3'- -GGGACGC--------------UCGa-CgUGGUGCGGgUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 31155 | 0.66 | 0.417621 |
Target: 5'- gCCUGCcucgcgGAGCUGCccgGCCuGCGCCaucaGGCc -3' miRNA: 3'- gGGACG------CUCGACG---UGG-UGCGGg---UCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 35374 | 0.66 | 0.417621 |
Target: 5'- gCCUGUGcuGCUGCAgCC-UGCUCGGCc -3' miRNA: 3'- gGGACGCu-CGACGU-GGuGCGGGUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 28736 | 0.66 | 0.435939 |
Target: 5'- gCUCUGC-AGUUcccGCGCCGCGCUCcGCa -3' miRNA: 3'- -GGGACGcUCGA---CGUGGUGCGGGuCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 53804 | 0.67 | 0.35737 |
Target: 5'- uUCUGgugGGGCUGCACCAaggucuCGCCgGGCu -3' miRNA: 3'- gGGACg--CUCGACGUGGU------GCGGgUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 42880 | 0.67 | 0.349275 |
Target: 5'- gCCC-GCGAGgauCUGCgACCgagaACGaCCCAGCGc -3' miRNA: 3'- -GGGaCGCUC---GACG-UGG----UGC-GGGUCGC- -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 27593 | 0.69 | 0.249814 |
Target: 5'- aUUUGCGAGgguuuUUGCugCGCGUCCGGCu -3' miRNA: 3'- gGGACGCUC-----GACGugGUGCGGGUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 41611 | 0.69 | 0.262453 |
Target: 5'- cCUCUGCGAGa---GCCACGCCCAcCa -3' miRNA: 3'- -GGGACGCUCgacgUGGUGCGGGUcGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 3151 | 0.69 | 0.268964 |
Target: 5'- cCCCUugGCGAGCUccgaaagcaccgGCACCGCGCCg---- -3' miRNA: 3'- -GGGA--CGCUCGA------------CGUGGUGCGGgucgc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 30545 | 0.69 | 0.275606 |
Target: 5'- gCCgCUGCGAcgcGCUGCuCUAC-UCCAGCGg -3' miRNA: 3'- -GG-GACGCU---CGACGuGGUGcGGGUCGC- -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 30670 | 0.68 | 0.318217 |
Target: 5'- -gCUGCGcGGaucGCGCCACGCCgGGCc -3' miRNA: 3'- ggGACGC-UCga-CGUGGUGCGGgUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 31097 | 0.68 | 0.325783 |
Target: 5'- uCCUUGCG-GCaaUGCGCUGCuGCUCGGCu -3' miRNA: 3'- -GGGACGCuCG--ACGUGGUG-CGGGUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 49334 | 0.68 | 0.333482 |
Target: 5'- aUCUGCacguGCUGUGCgGCGCCaaCAGCGg -3' miRNA: 3'- gGGACGcu--CGACGUGgUGCGG--GUCGC- -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 2293 | 0.68 | 0.333482 |
Target: 5'- cCCCUGCGGGCggGCugCuuccugaauAUGCCUuGCu -3' miRNA: 3'- -GGGACGCUCGa-CGugG---------UGCGGGuCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 50516 | 1.09 | 0.000284 |
Target: 5'- gCCCUGCGAGCUGCACCACGCCCAGCGc -3' miRNA: 3'- -GGGACGCUCGACGUGGUGCGGGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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