Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 4535 | 0.75 | 0.099862 |
Target: 5'- gCCUGaauCGGGUUGCAgCAUGCCCGGCc -3' miRNA: 3'- gGGAC---GCUCGACGUgGUGCGGGUCGc -5' |
|||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 43196 | 0.72 | 0.161727 |
Target: 5'- aCCUGCGGGacuuugGCAUUAUGCCCgcuGGCGg -3' miRNA: 3'- gGGACGCUCga----CGUGGUGCGGG---UCGC- -5' |
|||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 25258 | 0.68 | 0.303485 |
Target: 5'- gCCUgGUGAGCUGCGCgacgGCGCCC-GUa -3' miRNA: 3'- gGGA-CGCUCGACGUGg---UGCGGGuCGc -5' |
|||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 45770 | 0.68 | 0.318217 |
Target: 5'- gCCCUGCucacgccucgccGAGCcccUGCAUCuauUGCCCAGgGg -3' miRNA: 3'- -GGGACG------------CUCG---ACGUGGu--GCGGGUCgC- -5' |
|||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 41642 | 0.67 | 0.37395 |
Target: 5'- aCCUGCGAGgaacagGC-CCGCGCCgcugucguUAGCGu -3' miRNA: 3'- gGGACGCUCga----CGuGGUGCGG--------GUCGC- -5' |
|||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 24309 | 0.67 | 0.382433 |
Target: 5'- aCCUGCGAGCUcGCcucaaCACGCUCuaugacGGCu -3' miRNA: 3'- gGGACGCUCGA-CGug---GUGCGGG------UCGc -5' |
|||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 12292 | 0.66 | 0.435939 |
Target: 5'- uCUCUGCGAGacccGCGagaC-CGUCCGGCGg -3' miRNA: 3'- -GGGACGCUCga--CGUg--GuGCGGGUCGC- -5' |
|||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 13952 | 0.66 | 0.435939 |
Target: 5'- aCCUGCcuGGC-GCAUUACGCCCucccGCa -3' miRNA: 3'- gGGACGc-UCGaCGUGGUGCGGGu---CGc -5' |
|||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 50516 | 1.09 | 0.000284 |
Target: 5'- gCCCUGCGAGCUGCACCACGCCCAGCGc -3' miRNA: 3'- -GGGACGCUCGACGUGGUGCGGGUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home