Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12400 | 3' | -61.3 | NC_003324.1 | + | 41642 | 0.67 | 0.37395 |
Target: 5'- aCCUGCGAGgaacagGC-CCGCGCCgcugucguUAGCGu -3' miRNA: 3'- gGGACGCUCga----CGuGGUGCGG--------GUCGC- -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 35551 | 0.67 | 0.379875 |
Target: 5'- aUCUGCGAGCggaucugcaaggccUGCGCCuGCGUCUucuGCGc -3' miRNA: 3'- gGGACGCUCG--------------ACGUGG-UGCGGGu--CGC- -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 24309 | 0.67 | 0.382433 |
Target: 5'- aCCUGCGAGCUcGCcucaaCACGCUCuaugacGGCu -3' miRNA: 3'- gGGACGCUCGA-CGug---GUGCGGG------UCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 16124 | 0.66 | 0.388448 |
Target: 5'- gUCCUGCGcagggcgcuucgguAGCggGgGCCGCGCCaGGCa -3' miRNA: 3'- -GGGACGC--------------UCGa-CgUGGUGCGGgUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 31155 | 0.66 | 0.417621 |
Target: 5'- gCCUGCcucgcgGAGCUGCccgGCCuGCGCCaucaGGCc -3' miRNA: 3'- gGGACG------CUCGACG---UGG-UGCGGg---UCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 35374 | 0.66 | 0.417621 |
Target: 5'- gCCUGUGcuGCUGCAgCC-UGCUCGGCc -3' miRNA: 3'- gGGACGCu-CGACGU-GGuGCGGGUCGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 12292 | 0.66 | 0.435939 |
Target: 5'- uCUCUGCGAGacccGCGagaC-CGUCCGGCGg -3' miRNA: 3'- -GGGACGCUCga--CGUg--GuGCGGGUCGC- -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 13952 | 0.66 | 0.435939 |
Target: 5'- aCCUGCcuGGC-GCAUUACGCCCucccGCa -3' miRNA: 3'- gGGACGc-UCGaCGUGGUGCGGGu---CGc -5' |
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12400 | 3' | -61.3 | NC_003324.1 | + | 28736 | 0.66 | 0.435939 |
Target: 5'- gCUCUGC-AGUUcccGCGCCGCGCUCcGCa -3' miRNA: 3'- -GGGACGcUCGA---CGUGGUGCGGGuCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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