miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12403 5' -55.6 NC_003324.1 + 56139 0.66 0.693805
Target:  5'- cGCCAGccugGaAGCCGacgGCCguGGCGACu -3'
miRNA:   3'- uCGGUCua--CaUCGGCaa-CGG--CCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 32374 0.66 0.660696
Target:  5'- cGCgCAGA---GGCCGUUGUCGcCAGCg -3'
miRNA:   3'- uCG-GUCUacaUCGGCAACGGCcGUUG- -5'
12403 5' -55.6 NC_003324.1 + 17777 0.66 0.649591
Target:  5'- gGGCCAucau--GCCGgugaUGCCGGCGAUc -3'
miRNA:   3'- -UCGGUcuacauCGGCa---ACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 9480 0.66 0.649591
Target:  5'- cGGCCcgcuaccugaAGAaugGUGGCacg-GCCGGCGGCa -3'
miRNA:   3'- -UCGG----------UCUa--CAUCGgcaaCGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 56821 0.66 0.638469
Target:  5'- uGCCGGggGUGGUgGgauUGCgGcGCAACg -3'
miRNA:   3'- uCGGUCuaCAUCGgCa--ACGgC-CGUUG- -5'
12403 5' -55.6 NC_003324.1 + 5822 0.66 0.638469
Target:  5'- cGCUcGAaacgGUAGCCGgUGCCGcCAACg -3'
miRNA:   3'- uCGGuCUa---CAUCGGCaACGGCcGUUG- -5'
12403 5' -55.6 NC_003324.1 + 25309 0.67 0.627341
Target:  5'- cGGCCAGGUGcucgaaccgucAGUCGgcGCaGGCAACu -3'
miRNA:   3'- -UCGGUCUACa----------UCGGCaaCGgCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 41119 0.67 0.616218
Target:  5'- cGGUCccuccugggAGcgGUAGCUGUUGCgucaugCGGCAACc -3'
miRNA:   3'- -UCGG---------UCuaCAUCGGCAACG------GCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 27833 0.67 0.616218
Target:  5'- cAGCCGcuGGUGUAGuuGUcgagGuaGGCGGCg -3'
miRNA:   3'- -UCGGU--CUACAUCggCAa---CggCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 51531 0.67 0.605109
Target:  5'- uGGCCGGuggcuUGggcuGCCGUcuUGC-GGCAACg -3'
miRNA:   3'- -UCGGUCu----ACau--CGGCA--ACGgCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 17736 0.67 0.605109
Target:  5'- cAGCaGGuUGaAGCCGauugUGCCGGUGACa -3'
miRNA:   3'- -UCGgUCuACaUCGGCa---ACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 28439 0.67 0.605109
Target:  5'- uGUCGucUGUcguuccccAGCCGUUGCCGGCc-- -3'
miRNA:   3'- uCGGUcuACA--------UCGGCAACGGCCGuug -5'
12403 5' -55.6 NC_003324.1 + 53490 0.67 0.594024
Target:  5'- aAGCC-GA---GGCCGaaUGCCGGCGAUg -3'
miRNA:   3'- -UCGGuCUacaUCGGCa-ACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 37458 0.67 0.594024
Target:  5'- cGCgGGAUGgAGCCGggGUCuccgggaugGGCGACu -3'
miRNA:   3'- uCGgUCUACaUCGGCaaCGG---------CCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 42761 0.67 0.582972
Target:  5'- cGCCAGcgGUuGCCGguccuggugGCCcGGCGAa -3'
miRNA:   3'- uCGGUCuaCAuCGGCaa-------CGG-CCGUUg -5'
12403 5' -55.6 NC_003324.1 + 32015 0.67 0.571961
Target:  5'- uAGCUugcucaacaGGaAUG-AGCUGUcUGCCGGCGGCg -3'
miRNA:   3'- -UCGG---------UC-UACaUCGGCA-ACGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 31251 0.68 0.539263
Target:  5'- gGGCCuGAUGgcGCag--GCCgGGCAGCu -3'
miRNA:   3'- -UCGGuCUACauCGgcaaCGG-CCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 53720 0.68 0.528501
Target:  5'- cGCaCGGcgGUAGUucuuuUGgaGCCGGCGACg -3'
miRNA:   3'- uCG-GUCuaCAUCG-----GCaaCGGCCGUUG- -5'
12403 5' -55.6 NC_003324.1 + 32120 0.68 0.528501
Target:  5'- cGGCC--GUG-AGCCGccGCCGGCAGa -3'
miRNA:   3'- -UCGGucUACaUCGGCaaCGGCCGUUg -5'
12403 5' -55.6 NC_003324.1 + 28143 0.69 0.496723
Target:  5'- aAGgCGGAUGcGGCCGaccuuguagUUGCCGGCuuCc -3'
miRNA:   3'- -UCgGUCUACaUCGGC---------AACGGCCGuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.