miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12404 5' -51.4 NC_003324.1 + 29944 0.68 0.860509
Target:  5'- uCCGgacgggCGAggggCGUCcuGCG-UAGCGGCGg -3'
miRNA:   3'- -GGCa-----GUUaa--GCAGu-CGCuAUCGCCGC- -5'
12404 5' -51.4 NC_003324.1 + 30327 0.7 0.755275
Target:  5'- aUCGcCGAUggUGUCGGCGGUGGCgucgcucGGCGc -3'
miRNA:   3'- -GGCaGUUAa-GCAGUCGCUAUCG-------CCGC- -5'
12404 5' -51.4 NC_003324.1 + 30616 0.66 0.930478
Target:  5'- -aG-CGcgUCG-CAGCGGcAGCGGCa -3'
miRNA:   3'- ggCaGUuaAGCaGUCGCUaUCGCCGc -5'
12404 5' -51.4 NC_003324.1 + 35448 0.72 0.636515
Target:  5'- uUCGUgCAGgaucaCGUCGGCGAUGuCGGCGa -3'
miRNA:   3'- -GGCA-GUUaa---GCAGUCGCUAUcGCCGC- -5'
12404 5' -51.4 NC_003324.1 + 41061 0.72 0.603137
Target:  5'- gCCuugCAGcgCGUCAccGUGAUAGCGGCGa -3'
miRNA:   3'- -GGca-GUUaaGCAGU--CGCUAUCGCCGC- -5'
12404 5' -51.4 NC_003324.1 + 44574 0.69 0.786924
Target:  5'- cCCGU----UCGgCAGCGAcacGGCGGCGa -3'
miRNA:   3'- -GGCAguuaAGCaGUCGCUa--UCGCCGC- -5'
12404 5' -51.4 NC_003324.1 + 48279 0.68 0.834495
Target:  5'- cUCGUCAGUggucUCGgagaacCAGCGAacGCGGCc -3'
miRNA:   3'- -GGCAGUUA----AGCa-----GUCGCUauCGCCGc -5'
12404 5' -51.4 NC_003324.1 + 48944 0.68 0.825376
Target:  5'- gCCGUCGcUUCuUCGGCaGUcGCGGCa -3'
miRNA:   3'- -GGCAGUuAAGcAGUCGcUAuCGCCGc -5'
12404 5' -51.4 NC_003324.1 + 52183 0.67 0.898899
Target:  5'- cUCGUCAAaauaaUCGUCGGCGuccuUA-CGGCa -3'
miRNA:   3'- -GGCAGUUa----AGCAGUCGCu---AUcGCCGc -5'
12404 5' -51.4 NC_003324.1 + 56669 1.11 0.002303
Target:  5'- gCCGUCAAUUCGUCAGCGAUAGCGGCGu -3'
miRNA:   3'- -GGCAGUUAAGCAGUCGCUAUCGCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.