miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 2264 1.1 0.00044
Target:  5'- aCAACCACUCCCGCAGCGACCGCGACCc -3'
miRNA:   3'- -GUUGGUGAGGGCGUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 14657 0.81 0.058891
Target:  5'- cCGGCCGCUUgCGcCGGCaGGCCGCGACCc -3'
miRNA:   3'- -GUUGGUGAGgGC-GUCG-CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 38452 0.78 0.102686
Target:  5'- -cACCACuuccUCCCGCA-CGACgGCGACCa -3'
miRNA:   3'- guUGGUG----AGGGCGUcGCUGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 28751 0.74 0.205577
Target:  5'- -cGCCGCgCuCCGCAucucUGACCGCGACCa -3'
miRNA:   3'- guUGGUGaG-GGCGUc---GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 38073 0.73 0.227728
Target:  5'- gCAACCGCUCCgGCA-UGGCCGCcuaACCc -3'
miRNA:   3'- -GUUGGUGAGGgCGUcGCUGGCGc--UGG- -5'
12408 3' -58.6 NC_003324.1 + 8951 0.72 0.245641
Target:  5'- uGGCCGCaucUCCCGCGGCuACCGaaaugcucccgaCGGCCg -3'
miRNA:   3'- gUUGGUG---AGGGCGUCGcUGGC------------GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 49041 0.72 0.251866
Target:  5'- -cACCuCUCCCGCGGCGGCgG-GGCa -3'
miRNA:   3'- guUGGuGAGGGCGUCGCUGgCgCUGg -5'
12408 3' -58.6 NC_003324.1 + 41196 0.72 0.264706
Target:  5'- -uACCGCUCCCaGgAGgGACCGCaugaGCCg -3'
miRNA:   3'- guUGGUGAGGG-CgUCgCUGGCGc---UGG- -5'
12408 3' -58.6 NC_003324.1 + 11580 0.72 0.271323
Target:  5'- -uGCUGCUCCCGCGGCuccuGCCGgaGACUg -3'
miRNA:   3'- guUGGUGAGGGCGUCGc---UGGCg-CUGG- -5'
12408 3' -58.6 NC_003324.1 + 22304 0.72 0.271323
Target:  5'- -uGCCGCUCCCGaAG-GugCGCGGCg -3'
miRNA:   3'- guUGGUGAGGGCgUCgCugGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 41648 0.72 0.278072
Target:  5'- --cCCGCUCUCGuCGGCGGC-GCGACg -3'
miRNA:   3'- guuGGUGAGGGC-GUCGCUGgCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 31608 0.71 0.29912
Target:  5'- gCGGCCAUUCUCacgacgagGaCGGCgGACUGCGACCa -3'
miRNA:   3'- -GUUGGUGAGGG--------C-GUCG-CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 30538 0.71 0.306405
Target:  5'- -uGCCGCUgCCGCuGCGACgCGCuGCUc -3'
miRNA:   3'- guUGGUGAgGGCGuCGCUG-GCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 18349 0.71 0.313825
Target:  5'- uCGGCCGaUUCCGuCAGCGGUCGCGGCUc -3'
miRNA:   3'- -GUUGGUgAGGGC-GUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 30815 0.71 0.313825
Target:  5'- --gUCACUCCCGagcagcaGGCGGCCGaCG-CCa -3'
miRNA:   3'- guuGGUGAGGGCg------UCGCUGGC-GCuGG- -5'
12408 3' -58.6 NC_003324.1 + 25739 0.7 0.32138
Target:  5'- gAACUuCUCUCGguGCG-CCGCGAaCCc -3'
miRNA:   3'- gUUGGuGAGGGCguCGCuGGCGCU-GG- -5'
12408 3' -58.6 NC_003324.1 + 11845 0.7 0.32138
Target:  5'- --gUCugUCCUGC-GCGACCG-GGCCg -3'
miRNA:   3'- guuGGugAGGGCGuCGCUGGCgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 21163 0.7 0.344857
Target:  5'- gCAGCaCGCg-CCGCGGCGGCCGacaaGGCa -3'
miRNA:   3'- -GUUG-GUGagGGCGUCGCUGGCg---CUGg -5'
12408 3' -58.6 NC_003324.1 + 24404 0.7 0.344857
Target:  5'- gGACCGCguugCCgGCAuggugcGCGuCCGCGACg -3'
miRNA:   3'- gUUGGUGa---GGgCGU------CGCuGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 47618 0.7 0.361179
Target:  5'- -uACCACgCCgCGCA-UGACgGCGACCg -3'
miRNA:   3'- guUGGUGaGG-GCGUcGCUGgCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.