miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 40228 0.67 0.509545
Target:  5'- cCGGCUucggugcugGCUCCCGCu-CGACUGCcGCCu -3'
miRNA:   3'- -GUUGG---------UGAGGGCGucGCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 14772 0.68 0.441019
Target:  5'- aCGGCUggaaaGCUCagcaggaaaUCGCGGCGAagaaCGCGGCCg -3'
miRNA:   3'- -GUUGG-----UGAG---------GGCGUCGCUg---GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 21853 0.68 0.450496
Target:  5'- gCAGCCGggcCUCCU-CGGCGGCCuuGGCCu -3'
miRNA:   3'- -GUUGGU---GAGGGcGUCGCUGGcgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 16133 0.67 0.479576
Target:  5'- aGGgCGCUUCgGUAGCGgggGCCGCG-CCa -3'
miRNA:   3'- gUUgGUGAGGgCGUCGC---UGGCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 8176 0.67 0.479576
Target:  5'- gGGCCAgUCCCuGCucacugcccGGCGGCgCGCG-CCu -3'
miRNA:   3'- gUUGGUgAGGG-CG---------UCGCUG-GCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 54407 0.67 0.489473
Target:  5'- aCGGCaACUCCC-CGG-GACCGCuGCCg -3'
miRNA:   3'- -GUUGgUGAGGGcGUCgCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 4487 0.67 0.499464
Target:  5'- gCGGCuCACaUCCUcuacgGCGGCGA-CGCGACUa -3'
miRNA:   3'- -GUUG-GUG-AGGG-----CGUCGCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 5563 0.67 0.499464
Target:  5'- gCAACC-UUCgCCGCGGgcgucaucggccUGACCGUGAUCg -3'
miRNA:   3'- -GUUGGuGAG-GGCGUC------------GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 29978 0.67 0.509545
Target:  5'- gCAGCCGggUCCGCAuCGAUCcCGGCCg -3'
miRNA:   3'- -GUUGGUgaGGGCGUcGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 37995 0.69 0.413286
Target:  5'- gCGGCCAUg-CCGgAGCGGuuGCGGCg -3'
miRNA:   3'- -GUUGGUGagGGCgUCGCUggCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 5211 0.69 0.413286
Target:  5'- -uAUCGCUggCGCGGCGACCGCaauCCg -3'
miRNA:   3'- guUGGUGAggGCGUCGCUGGCGcu-GG- -5'
12408 3' -58.6 NC_003324.1 + 42873 0.69 0.40339
Target:  5'- cCGGCCGg-CCCGCGaggaucuGCGACCGagaaCGACCc -3'
miRNA:   3'- -GUUGGUgaGGGCGU-------CGCUGGC----GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 28751 0.74 0.205577
Target:  5'- -cGCCGCgCuCCGCAucucUGACCGCGACCa -3'
miRNA:   3'- guUGGUGaG-GGCGUc---GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 49041 0.72 0.251866
Target:  5'- -cACCuCUCCCGCGGCGGCgG-GGCa -3'
miRNA:   3'- guUGGuGAGGGCGUCGCUGgCgCUGg -5'
12408 3' -58.6 NC_003324.1 + 11580 0.72 0.271323
Target:  5'- -uGCUGCUCCCGCGGCuccuGCCGgaGACUg -3'
miRNA:   3'- guUGGUGAGGGCGUCGc---UGGCg-CUGG- -5'
12408 3' -58.6 NC_003324.1 + 41648 0.72 0.278072
Target:  5'- --cCCGCUCUCGuCGGCGGC-GCGACg -3'
miRNA:   3'- guuGGUGAGGGC-GUCGCUGgCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 30538 0.71 0.306405
Target:  5'- -uGCCGCUgCCGCuGCGACgCGCuGCUc -3'
miRNA:   3'- guUGGUGAgGGCGuCGCUG-GCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 25739 0.7 0.32138
Target:  5'- gAACUuCUCUCGguGCG-CCGCGAaCCc -3'
miRNA:   3'- gUUGGuGAGGGCguCGCuGGCGCU-GG- -5'
12408 3' -58.6 NC_003324.1 + 47618 0.7 0.361179
Target:  5'- -uACCACgCCgCGCA-UGACgGCGACCg -3'
miRNA:   3'- guUGGUGaGG-GCGUcGCUGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35016 0.69 0.386655
Target:  5'- -uGCCGCagCagcaGCAGCGGCgGCGGCa -3'
miRNA:   3'- guUGGUGagGg---CGUCGCUGgCGCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.