miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 41648 0.72 0.278072
Target:  5'- --cCCGCUCUCGuCGGCGGC-GCGACg -3'
miRNA:   3'- guuGGUGAGGGC-GUCGCUGgCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 30538 0.71 0.306405
Target:  5'- -uGCCGCUgCCGCuGCGACgCGCuGCUc -3'
miRNA:   3'- guUGGUGAgGGCGuCGCUG-GCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 25739 0.7 0.32138
Target:  5'- gAACUuCUCUCGguGCG-CCGCGAaCCc -3'
miRNA:   3'- gUUGGuGAGGGCguCGCuGGCGCU-GG- -5'
12408 3' -58.6 NC_003324.1 + 47618 0.7 0.361179
Target:  5'- -uACCACgCCgCGCA-UGACgGCGACCg -3'
miRNA:   3'- guUGGUGaGG-GCGUcGCUGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 21853 0.68 0.450496
Target:  5'- gCAGCCGggcCUCCU-CGGCGGCCuuGGCCu -3'
miRNA:   3'- -GUUGGU---GAGGGcGUCGCUGGcgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 14772 0.68 0.441019
Target:  5'- aCGGCUggaaaGCUCagcaggaaaUCGCGGCGAagaaCGCGGCCg -3'
miRNA:   3'- -GUUGG-----UGAG---------GGCGUCGCUg---GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 37995 0.69 0.413286
Target:  5'- gCGGCCAUg-CCGgAGCGGuuGCGGCg -3'
miRNA:   3'- -GUUGGUGagGGCgUCGCUggCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 5211 0.69 0.413286
Target:  5'- -uAUCGCUggCGCGGCGACCGCaauCCg -3'
miRNA:   3'- guUGGUGAggGCGUCGCUGGCGcu-GG- -5'
12408 3' -58.6 NC_003324.1 + 42873 0.69 0.40339
Target:  5'- cCGGCCGg-CCCGCGaggaucuGCGACCGagaaCGACCc -3'
miRNA:   3'- -GUUGGUgaGGGCGU-------CGCUGGC----GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35016 0.69 0.386655
Target:  5'- -uGCCGCagCagcaGCAGCGGCgGCGGCa -3'
miRNA:   3'- guUGGUGagGg---CGUCGCUGgCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 25694 0.66 0.540271
Target:  5'- gCAGCCGugCCggcgcaGCAGCGGCCGacaGACUa -3'
miRNA:   3'- -GUUGGUgaGGg-----CGUCGCUGGCg--CUGG- -5'
12408 3' -58.6 NC_003324.1 + 49494 0.66 0.540271
Target:  5'- -cGCCGCUgCCGgGcucGcCGAUCGCGAUCg -3'
miRNA:   3'- guUGGUGAgGGCgU---C-GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 42212 0.66 0.550654
Target:  5'- -uGCUGaucCCCGCGGCGGCauugGCGACg -3'
miRNA:   3'- guUGGUga-GGGCGUCGCUGg---CGCUGg -5'
12408 3' -58.6 NC_003324.1 + 33852 0.66 0.550654
Target:  5'- -cACCAUUUgCCGCGGUGACUGgGAg- -3'
miRNA:   3'- guUGGUGAG-GGCGUCGCUGGCgCUgg -5'
12408 3' -58.6 NC_003324.1 + 22346 0.66 0.550654
Target:  5'- aCGACgACaUCaaggCGCAGCucGCCGCGAUCg -3'
miRNA:   3'- -GUUGgUG-AGg---GCGUCGc-UGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 3414 0.66 0.561098
Target:  5'- gAGCCACUgCaGuCGGCGACCGUcuucgGGCUg -3'
miRNA:   3'- gUUGGUGAgGgC-GUCGCUGGCG-----CUGG- -5'
12408 3' -58.6 NC_003324.1 + 38422 0.66 0.58214
Target:  5'- -cGCCGC-CCCGguGCccUCGUGAUCg -3'
miRNA:   3'- guUGGUGaGGGCguCGcuGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35110 0.66 0.58214
Target:  5'- aGGCCGCUgCUGCcGCcGCCGCuGCUg -3'
miRNA:   3'- gUUGGUGAgGGCGuCGcUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 9622 0.66 0.58214
Target:  5'- --cCCACUCCgGCuGaccacccaGACC-CGACCa -3'
miRNA:   3'- guuGGUGAGGgCGuCg-------CUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 14657 0.81 0.058891
Target:  5'- cCGGCCGCUUgCGcCGGCaGGCCGCGACCc -3'
miRNA:   3'- -GUUGGUGAGgGC-GUCG-CUGGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.