Results 21 - 40 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 16252 | 0.66 | 0.540271 |
Target: 5'- gAGCUGCggugCCCGCcucggugccAGCGAUgccuggCGCGGCCc -3' miRNA: 3'- gUUGGUGa---GGGCG---------UCGCUG------GCGCUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 16311 | 0.67 | 0.509545 |
Target: 5'- cCAAUUACaagCagcagaCGCAGCGGuCCGCGACg -3' miRNA: 3'- -GUUGGUGa--Gg-----GCGUCGCU-GGCGCUGg -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 16941 | 0.66 | 0.58214 |
Target: 5'- aGAUCGgUUCCGcCAGCaGAUCGCGugUu -3' miRNA: 3'- gUUGGUgAGGGC-GUCG-CUGGCGCugG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 18349 | 0.71 | 0.313825 |
Target: 5'- uCGGCCGaUUCCGuCAGCGGUCGCGGCUc -3' miRNA: 3'- -GUUGGUgAGGGC-GUCGCUGGCGCUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 20418 | 0.68 | 0.422411 |
Target: 5'- gAACCgGCUUCUGuCGGCGAUgGCGAaCCc -3' miRNA: 3'- gUUGG-UGAGGGC-GUCGCUGgCGCU-GG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 20568 | 0.67 | 0.509545 |
Target: 5'- uCAAUCGCaacaUCCCGCuccGCGauGCgGCGAUCg -3' miRNA: 3'- -GUUGGUG----AGGGCGu--CGC--UGgCGCUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 21163 | 0.7 | 0.344857 |
Target: 5'- gCAGCaCGCg-CCGCGGCGGCCGacaaGGCa -3' miRNA: 3'- -GUUG-GUGagGGCGUCGCUGGCg---CUGg -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 21853 | 0.68 | 0.450496 |
Target: 5'- gCAGCCGggcCUCCU-CGGCGGCCuuGGCCu -3' miRNA: 3'- -GUUGGU---GAGGGcGUCGCUGGcgCUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 22304 | 0.72 | 0.271323 |
Target: 5'- -uGCCGCUCCCGaAG-GugCGCGGCg -3' miRNA: 3'- guUGGUGAGGGCgUCgCugGCGCUGg -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 22346 | 0.66 | 0.550654 |
Target: 5'- aCGACgACaUCaaggCGCAGCucGCCGCGAUCg -3' miRNA: 3'- -GUUGgUG-AGg---GCGUCGc-UGGCGCUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 24404 | 0.7 | 0.344857 |
Target: 5'- gGACCGCguugCCgGCAuggugcGCGuCCGCGACg -3' miRNA: 3'- gUUGGUGa---GGgCGU------CGCuGGCGCUGg -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 25694 | 0.66 | 0.540271 |
Target: 5'- gCAGCCGugCCggcgcaGCAGCGGCCGacaGACUa -3' miRNA: 3'- -GUUGGUgaGGg-----CGUCGCUGGCg--CUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 25739 | 0.7 | 0.32138 |
Target: 5'- gAACUuCUCUCGguGCG-CCGCGAaCCc -3' miRNA: 3'- gUUGGuGAGGGCguCGCuGGCGCU-GG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 26265 | 0.69 | 0.404283 |
Target: 5'- aGACgcaGC-CCCGCAGCGAgaCCGcCGACa -3' miRNA: 3'- gUUGg--UGaGGGCGUCGCU--GGC-GCUGg -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 28751 | 0.74 | 0.205577 |
Target: 5'- -cGCCGCgCuCCGCAucucUGACCGCGACCa -3' miRNA: 3'- guUGGUGaG-GGCGUc---GCUGGCGCUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 29978 | 0.67 | 0.509545 |
Target: 5'- gCAGCCGggUCCGCAuCGAUCcCGGCCg -3' miRNA: 3'- -GUUGGUgaGGGCGUcGCUGGcGCUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 30170 | 0.69 | 0.389267 |
Target: 5'- uGACCGaaggcgucgaggaagCCGCAGCGGCCggugucGCGACCg -3' miRNA: 3'- gUUGGUgag------------GGCGUCGCUGG------CGCUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 30538 | 0.71 | 0.306405 |
Target: 5'- -uGCCGCUgCCGCuGCGACgCGCuGCUc -3' miRNA: 3'- guUGGUGAgGGCGuCGCUG-GCGcUGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 30815 | 0.71 | 0.313825 |
Target: 5'- --gUCACUCCCGagcagcaGGCGGCCGaCG-CCa -3' miRNA: 3'- guuGGUGAGGGCg------UCGCUGGC-GCuGG- -5' |
|||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 31223 | 0.66 | 0.592723 |
Target: 5'- uGACgAUgccCCCGcCAGCGccagcGCCGcCGGCCg -3' miRNA: 3'- gUUGgUGa--GGGC-GUCGC-----UGGC-GCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home