miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 41427 0.67 0.529954
Target:  5'- aAGCCGC-CCC-CAGCG-CCGauuucgaGGCCg -3'
miRNA:   3'- gUUGGUGaGGGcGUCGCuGGCg------CUGG- -5'
12408 3' -58.6 NC_003324.1 + 41196 0.72 0.264706
Target:  5'- -uACCGCUCCCaGgAGgGACCGCaugaGCCg -3'
miRNA:   3'- guUGGUGAGGG-CgUCgCUGGCGc---UGG- -5'
12408 3' -58.6 NC_003324.1 + 40228 0.67 0.509545
Target:  5'- cCGGCUucggugcugGCUCCCGCu-CGACUGCcGCCu -3'
miRNA:   3'- -GUUGG---------UGAGGGCGucGCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 38452 0.78 0.102686
Target:  5'- -cACCACuuccUCCCGCA-CGACgGCGACCa -3'
miRNA:   3'- guUGGUG----AGGGCGUcGCUGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 38422 0.66 0.58214
Target:  5'- -cGCCGC-CCCGguGCccUCGUGAUCg -3'
miRNA:   3'- guUGGUGaGGGCguCGcuGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 38073 0.73 0.227728
Target:  5'- gCAACCGCUCCgGCA-UGGCCGCcuaACCc -3'
miRNA:   3'- -GUUGGUGAGGgCGUcGCUGGCGc--UGG- -5'
12408 3' -58.6 NC_003324.1 + 37995 0.69 0.413286
Target:  5'- gCGGCCAUg-CCGgAGCGGuuGCGGCg -3'
miRNA:   3'- -GUUGGUGagGGCgUCGCUggCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 37829 0.68 0.441019
Target:  5'- uCGGCgA-UCCCGCucaAGCuGCCGCGACUg -3'
miRNA:   3'- -GUUGgUgAGGGCG---UCGcUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35110 0.66 0.58214
Target:  5'- aGGCCGCUgCUGCcGCcGCCGCuGCUg -3'
miRNA:   3'- gUUGGUGAgGGCGuCGcUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 35016 0.69 0.386655
Target:  5'- -uGCCGCagCagcaGCAGCGGCgGCGGCa -3'
miRNA:   3'- guUGGUGagGg---CGUCGCUGgCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 33852 0.66 0.550654
Target:  5'- -cACCAUUUgCCGCGGUGACUGgGAg- -3'
miRNA:   3'- guUGGUGAG-GGCGUCGCUGGCgCUgg -5'
12408 3' -58.6 NC_003324.1 + 32229 0.67 0.509545
Target:  5'- aCAAuuCCAagCCCGgGGCGGCC-CGGCCc -3'
miRNA:   3'- -GUU--GGUgaGGGCgUCGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 31608 0.71 0.29912
Target:  5'- gCGGCCAUUCUCacgacgagGaCGGCgGACUGCGACCa -3'
miRNA:   3'- -GUUGGUGAGGG--------C-GUCG-CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 31223 0.66 0.592723
Target:  5'- uGACgAUgccCCCGcCAGCGccagcGCCGcCGGCCg -3'
miRNA:   3'- gUUGgUGa--GGGC-GUCGC-----UGGC-GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 30815 0.71 0.313825
Target:  5'- --gUCACUCCCGagcagcaGGCGGCCGaCG-CCa -3'
miRNA:   3'- guuGGUGAGGGCg------UCGCUGGC-GCuGG- -5'
12408 3' -58.6 NC_003324.1 + 30538 0.71 0.306405
Target:  5'- -uGCCGCUgCCGCuGCGACgCGCuGCUc -3'
miRNA:   3'- guUGGUGAgGGCGuCGCUG-GCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 30170 0.69 0.389267
Target:  5'- uGACCGaaggcgucgaggaagCCGCAGCGGCCggugucGCGACCg -3'
miRNA:   3'- gUUGGUgag------------GGCGUCGCUGG------CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 29978 0.67 0.509545
Target:  5'- gCAGCCGggUCCGCAuCGAUCcCGGCCg -3'
miRNA:   3'- -GUUGGUgaGGGCGUcGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 28751 0.74 0.205577
Target:  5'- -cGCCGCgCuCCGCAucucUGACCGCGACCa -3'
miRNA:   3'- guUGGUGaG-GGCGUc---GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 26265 0.69 0.404283
Target:  5'- aGACgcaGC-CCCGCAGCGAgaCCGcCGACa -3'
miRNA:   3'- gUUGg--UGaGGGCGUCGCU--GGC-GCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.