miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 25739 0.7 0.32138
Target:  5'- gAACUuCUCUCGguGCG-CCGCGAaCCc -3'
miRNA:   3'- gUUGGuGAGGGCguCGCuGGCGCU-GG- -5'
12408 3' -58.6 NC_003324.1 + 25694 0.66 0.540271
Target:  5'- gCAGCCGugCCggcgcaGCAGCGGCCGacaGACUa -3'
miRNA:   3'- -GUUGGUgaGGg-----CGUCGCUGGCg--CUGG- -5'
12408 3' -58.6 NC_003324.1 + 24404 0.7 0.344857
Target:  5'- gGACCGCguugCCgGCAuggugcGCGuCCGCGACg -3'
miRNA:   3'- gUUGGUGa---GGgCGU------CGCuGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 22346 0.66 0.550654
Target:  5'- aCGACgACaUCaaggCGCAGCucGCCGCGAUCg -3'
miRNA:   3'- -GUUGgUG-AGg---GCGUCGc-UGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 22304 0.72 0.271323
Target:  5'- -uGCCGCUCCCGaAG-GugCGCGGCg -3'
miRNA:   3'- guUGGUGAGGGCgUCgCugGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 21853 0.68 0.450496
Target:  5'- gCAGCCGggcCUCCU-CGGCGGCCuuGGCCu -3'
miRNA:   3'- -GUUGGU---GAGGGcGUCGCUGGcgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 21163 0.7 0.344857
Target:  5'- gCAGCaCGCg-CCGCGGCGGCCGacaaGGCa -3'
miRNA:   3'- -GUUG-GUGagGGCGUCGCUGGCg---CUGg -5'
12408 3' -58.6 NC_003324.1 + 20568 0.67 0.509545
Target:  5'- uCAAUCGCaacaUCCCGCuccGCGauGCgGCGAUCg -3'
miRNA:   3'- -GUUGGUG----AGGGCGu--CGC--UGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 20418 0.68 0.422411
Target:  5'- gAACCgGCUUCUGuCGGCGAUgGCGAaCCc -3'
miRNA:   3'- gUUGG-UGAGGGC-GUCGCUGgCGCU-GG- -5'
12408 3' -58.6 NC_003324.1 + 18349 0.71 0.313825
Target:  5'- uCGGCCGaUUCCGuCAGCGGUCGCGGCUc -3'
miRNA:   3'- -GUUGGUgAGGGC-GUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 16941 0.66 0.58214
Target:  5'- aGAUCGgUUCCGcCAGCaGAUCGCGugUu -3'
miRNA:   3'- gUUGGUgAGGGC-GUCG-CUGGCGCugG- -5'
12408 3' -58.6 NC_003324.1 + 16311 0.67 0.509545
Target:  5'- cCAAUUACaagCagcagaCGCAGCGGuCCGCGACg -3'
miRNA:   3'- -GUUGGUGa--Gg-----GCGUCGCU-GGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 16252 0.66 0.540271
Target:  5'- gAGCUGCggugCCCGCcucggugccAGCGAUgccuggCGCGGCCc -3'
miRNA:   3'- gUUGGUGa---GGGCG---------UCGCUG------GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 16133 0.67 0.479576
Target:  5'- aGGgCGCUUCgGUAGCGgggGCCGCG-CCa -3'
miRNA:   3'- gUUgGUGAGGgCGUCGC---UGGCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 14772 0.68 0.441019
Target:  5'- aCGGCUggaaaGCUCagcaggaaaUCGCGGCGAagaaCGCGGCCg -3'
miRNA:   3'- -GUUGG-----UGAG---------GGCGUCGCUg---GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 14657 0.81 0.058891
Target:  5'- cCGGCCGCUUgCGcCGGCaGGCCGCGACCc -3'
miRNA:   3'- -GUUGGUGAGgGC-GUCG-CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 13073 0.66 0.571596
Target:  5'- gCAGCCGgUaccgCCGCcGcCGACCGCcGCCg -3'
miRNA:   3'- -GUUGGUgAg---GGCGuC-GCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 12590 0.68 0.441019
Target:  5'- -uGCCACcagCCCGUcguuggacgcguAGCaGACCGCGugACCg -3'
miRNA:   3'- guUGGUGa--GGGCG------------UCG-CUGGCGC--UGG- -5'
12408 3' -58.6 NC_003324.1 + 11845 0.7 0.32138
Target:  5'- --gUCugUCCUGC-GCGACCG-GGCCg -3'
miRNA:   3'- guuGGugAGGGCGuCGCUGGCgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 11580 0.72 0.271323
Target:  5'- -uGCUGCUCCCGCGGCuccuGCCGgaGACUg -3'
miRNA:   3'- guUGGUGAGGGCGUCGc---UGGCg-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.