miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 45992 0.67 0.489473
Target:  5'- --uUCGCUUCCGaAGCGGCgGCG-CCg -3'
miRNA:   3'- guuGGUGAGGGCgUCGCUGgCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 4487 0.67 0.499464
Target:  5'- gCGGCuCACaUCCUcuacgGCGGCGA-CGCGACUa -3'
miRNA:   3'- -GUUG-GUG-AGGG-----CGUCGCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 5563 0.67 0.499464
Target:  5'- gCAACC-UUCgCCGCGGgcgucaucggccUGACCGUGAUCg -3'
miRNA:   3'- -GUUGGuGAG-GGCGUC------------GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 49208 0.67 0.499464
Target:  5'- uCAAUCGagcggCCCGCcaucuuGGCGAUCGCGucACCg -3'
miRNA:   3'- -GUUGGUga---GGGCG------UCGCUGGCGC--UGG- -5'
12408 3' -58.6 NC_003324.1 + 56128 0.67 0.509545
Target:  5'- aAGCCgACggCCGUGGCGACUuugGCGAUCu -3'
miRNA:   3'- gUUGG-UGagGGCGUCGCUGG---CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 16311 0.67 0.509545
Target:  5'- cCAAUUACaagCagcagaCGCAGCGGuCCGCGACg -3'
miRNA:   3'- -GUUGGUGa--Gg-----GCGUCGCU-GGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 40228 0.67 0.509545
Target:  5'- cCGGCUucggugcugGCUCCCGCu-CGACUGCcGCCu -3'
miRNA:   3'- -GUUGG---------UGAGGGCGucGCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 29978 0.67 0.509545
Target:  5'- gCAGCCGggUCCGCAuCGAUCcCGGCCg -3'
miRNA:   3'- -GUUGGUgaGGGCGUcGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 32229 0.67 0.509545
Target:  5'- aCAAuuCCAagCCCGgGGCGGCC-CGGCCc -3'
miRNA:   3'- -GUU--GGUgaGGGCgUCGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 20568 0.67 0.509545
Target:  5'- uCAAUCGCaacaUCCCGCuccGCGauGCgGCGAUCg -3'
miRNA:   3'- -GUUGGUG----AGGGCGu--CGC--UGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 54140 0.67 0.529954
Target:  5'- uCGGCCgAUUCcgCCGCAGCGAaagccuCUGCGcGCCa -3'
miRNA:   3'- -GUUGG-UGAG--GGCGUCGCU------GGCGC-UGG- -5'
12408 3' -58.6 NC_003324.1 + 43334 0.67 0.529954
Target:  5'- -uGCCGCUgCCa-GGCGACCcugcagGCGGCCc -3'
miRNA:   3'- guUGGUGAgGGcgUCGCUGG------CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 41427 0.67 0.529954
Target:  5'- aAGCCGC-CCC-CAGCG-CCGauuucgaGGCCg -3'
miRNA:   3'- gUUGGUGaGGGcGUCGCuGGCg------CUGG- -5'
12408 3' -58.6 NC_003324.1 + 54506 0.67 0.529954
Target:  5'- gCAuCCGCgaagCCUGCAgcGCGACCgGCGuuCCg -3'
miRNA:   3'- -GUuGGUGa---GGGCGU--CGCUGG-CGCu-GG- -5'
12408 3' -58.6 NC_003324.1 + 25694 0.66 0.540271
Target:  5'- gCAGCCGugCCggcgcaGCAGCGGCCGacaGACUa -3'
miRNA:   3'- -GUUGGUgaGGg-----CGUCGCUGGCg--CUGG- -5'
12408 3' -58.6 NC_003324.1 + 44290 0.66 0.540271
Target:  5'- uCGAUCugUCUcgacgaaccgggCGCGGUGG-CGCGGCCg -3'
miRNA:   3'- -GUUGGugAGG------------GCGUCGCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 49494 0.66 0.540271
Target:  5'- -cGCCGCUgCCGgGcucGcCGAUCGCGAUCg -3'
miRNA:   3'- guUGGUGAgGGCgU---C-GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 55394 0.66 0.540271
Target:  5'- gAGCCGCUgUgGCAGCuuguuccagcaGCCGCGGCa -3'
miRNA:   3'- gUUGGUGAgGgCGUCGc----------UGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 16252 0.66 0.540271
Target:  5'- gAGCUGCggugCCCGCcucggugccAGCGAUgccuggCGCGGCCc -3'
miRNA:   3'- gUUGGUGa---GGGCG---------UCGCUG------GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 42212 0.66 0.550654
Target:  5'- -uGCUGaucCCCGCGGCGGCauugGCGACg -3'
miRNA:   3'- guUGGUga-GGGCGUCGCUGg---CGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.