miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 14772 0.68 0.441019
Target:  5'- aCGGCUggaaaGCUCagcaggaaaUCGCGGCGAagaaCGCGGCCg -3'
miRNA:   3'- -GUUGG-----UGAG---------GGCGUCGCUg---GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 20418 0.68 0.422411
Target:  5'- gAACCgGCUUCUGuCGGCGAUgGCGAaCCc -3'
miRNA:   3'- gUUGG-UGAGGGC-GUCGCUGgCGCU-GG- -5'
12408 3' -58.6 NC_003324.1 + 42270 0.69 0.416922
Target:  5'- cCGAUCACUCCgGCgcagugccgucguucGGCaaguacGAUCGCGGCCc -3'
miRNA:   3'- -GUUGGUGAGGgCG---------------UCG------CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 5211 0.69 0.413286
Target:  5'- -uAUCGCUggCGCGGCGACCGCaauCCg -3'
miRNA:   3'- guUGGUGAggGCGUCGCUGGCGcu-GG- -5'
12408 3' -58.6 NC_003324.1 + 37995 0.69 0.413286
Target:  5'- gCGGCCAUg-CCGgAGCGGuuGCGGCg -3'
miRNA:   3'- -GUUGGUGagGGCgUCGCUggCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 26265 0.69 0.404283
Target:  5'- aGACgcaGC-CCCGCAGCGAgaCCGcCGACa -3'
miRNA:   3'- gUUGg--UGaGGGCGUCGCU--GGC-GCUGg -5'
12408 3' -58.6 NC_003324.1 + 42873 0.69 0.40339
Target:  5'- cCGGCCGg-CCCGCGaggaucuGCGACCGagaaCGACCc -3'
miRNA:   3'- -GUUGGUgaGGGCGU-------CGCUGGC----GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 43689 0.69 0.395406
Target:  5'- ---gCugUCCgaGCAGuCGAgCGCGACCg -3'
miRNA:   3'- guugGugAGGg-CGUC-GCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 30170 0.69 0.389267
Target:  5'- uGACCGaaggcgucgaggaagCCGCAGCGGCCggugucGCGACCg -3'
miRNA:   3'- gUUGGUgag------------GGCGUCGCUGG------CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35016 0.69 0.386655
Target:  5'- -uGCCGCagCagcaGCAGCGGCgGCGGCa -3'
miRNA:   3'- guUGGUGagGg---CGUCGCUGgCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 7865 0.69 0.386655
Target:  5'- -cGCCGCggcggcaaagCCCGUuGCGAUCGCG-CCu -3'
miRNA:   3'- guUGGUGa---------GGGCGuCGCUGGCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 5647 0.69 0.36954
Target:  5'- aGGCCGaugacgCCCGCGGCGAaggUUGCGGCg -3'
miRNA:   3'- gUUGGUga----GGGCGUCGCU---GGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 47618 0.7 0.361179
Target:  5'- -uACCACgCCgCGCA-UGACgGCGACCg -3'
miRNA:   3'- guUGGUGaGG-GCGUcGCUGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 42005 0.7 0.361179
Target:  5'- gAACgCGguacCUCCggaUGCGGCGACUGCGAUCg -3'
miRNA:   3'- gUUG-GU----GAGG---GCGUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 21163 0.7 0.344857
Target:  5'- gCAGCaCGCg-CCGCGGCGGCCGacaaGGCa -3'
miRNA:   3'- -GUUG-GUGagGGCGUCGCUGGCg---CUGg -5'
12408 3' -58.6 NC_003324.1 + 24404 0.7 0.344857
Target:  5'- gGACCGCguugCCgGCAuggugcGCGuCCGCGACg -3'
miRNA:   3'- gUUGGUGa---GGgCGU------CGCuGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 11845 0.7 0.32138
Target:  5'- --gUCugUCCUGC-GCGACCG-GGCCg -3'
miRNA:   3'- guuGGugAGGGCGuCGCUGGCgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 25739 0.7 0.32138
Target:  5'- gAACUuCUCUCGguGCG-CCGCGAaCCc -3'
miRNA:   3'- gUUGGuGAGGGCguCGCuGGCGCU-GG- -5'
12408 3' -58.6 NC_003324.1 + 18349 0.71 0.313825
Target:  5'- uCGGCCGaUUCCGuCAGCGGUCGCGGCUc -3'
miRNA:   3'- -GUUGGUgAGGGC-GUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 30815 0.71 0.313825
Target:  5'- --gUCACUCCCGagcagcaGGCGGCCGaCG-CCa -3'
miRNA:   3'- guuGGUGAGGGCg------UCGCUGGC-GCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.