miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 41427 0.67 0.529954
Target:  5'- aAGCCGC-CCC-CAGCG-CCGauuucgaGGCCg -3'
miRNA:   3'- gUUGGUGaGGGcGUCGCuGGCg------CUGG- -5'
12408 3' -58.6 NC_003324.1 + 54506 0.67 0.529954
Target:  5'- gCAuCCGCgaagCCUGCAgcGCGACCgGCGuuCCg -3'
miRNA:   3'- -GUuGGUGa---GGGCGU--CGCUGG-CGCu-GG- -5'
12408 3' -58.6 NC_003324.1 + 54140 0.67 0.529954
Target:  5'- uCGGCCgAUUCcgCCGCAGCGAaagccuCUGCGcGCCa -3'
miRNA:   3'- -GUUGG-UGAG--GGCGUCGCU------GGCGC-UGG- -5'
12408 3' -58.6 NC_003324.1 + 32229 0.67 0.509545
Target:  5'- aCAAuuCCAagCCCGgGGCGGCC-CGGCCc -3'
miRNA:   3'- -GUU--GGUgaGGGCgUCGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 16311 0.67 0.509545
Target:  5'- cCAAUUACaagCagcagaCGCAGCGGuCCGCGACg -3'
miRNA:   3'- -GUUGGUGa--Gg-----GCGUCGCU-GGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 56128 0.67 0.509545
Target:  5'- aAGCCgACggCCGUGGCGACUuugGCGAUCu -3'
miRNA:   3'- gUUGG-UGagGGCGUCGCUGG---CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 20568 0.67 0.509545
Target:  5'- uCAAUCGCaacaUCCCGCuccGCGauGCgGCGAUCg -3'
miRNA:   3'- -GUUGGUG----AGGGCGu--CGC--UGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 29978 0.67 0.509545
Target:  5'- gCAGCCGggUCCGCAuCGAUCcCGGCCg -3'
miRNA:   3'- -GUUGGUgaGGGCGUcGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 40228 0.67 0.509545
Target:  5'- cCGGCUucggugcugGCUCCCGCu-CGACUGCcGCCu -3'
miRNA:   3'- -GUUGG---------UGAGGGCGucGCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 5563 0.67 0.499464
Target:  5'- gCAACC-UUCgCCGCGGgcgucaucggccUGACCGUGAUCg -3'
miRNA:   3'- -GUUGGuGAG-GGCGUC------------GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 4487 0.67 0.499464
Target:  5'- gCGGCuCACaUCCUcuacgGCGGCGA-CGCGACUa -3'
miRNA:   3'- -GUUG-GUG-AGGG-----CGUCGCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 49208 0.67 0.499464
Target:  5'- uCAAUCGagcggCCCGCcaucuuGGCGAUCGCGucACCg -3'
miRNA:   3'- -GUUGGUga---GGGCG------UCGCUGGCGC--UGG- -5'
12408 3' -58.6 NC_003324.1 + 54407 0.67 0.489473
Target:  5'- aCGGCaACUCCC-CGG-GACCGCuGCCg -3'
miRNA:   3'- -GUUGgUGAGGGcGUCgCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 45992 0.67 0.489473
Target:  5'- --uUCGCUUCCGaAGCGGCgGCG-CCg -3'
miRNA:   3'- guuGGUGAGGGCgUCGCUGgCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 16133 0.67 0.479576
Target:  5'- aGGgCGCUUCgGUAGCGgggGCCGCG-CCa -3'
miRNA:   3'- gUUgGUGAGGgCGUCGC---UGGCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 8176 0.67 0.479576
Target:  5'- gGGCCAgUCCCuGCucacugcccGGCGGCgCGCG-CCu -3'
miRNA:   3'- gUUGGUgAGGG-CG---------UCGCUG-GCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 6163 0.68 0.450496
Target:  5'- gGACCgACUugCCCuCGGCGAUCuCGACCa -3'
miRNA:   3'- gUUGG-UGA--GGGcGUCGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 21853 0.68 0.450496
Target:  5'- gCAGCCGggcCUCCU-CGGCGGCCuuGGCCu -3'
miRNA:   3'- -GUUGGU---GAGGGcGUCGCUGGcgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 12590 0.68 0.441019
Target:  5'- -uGCCACcagCCCGUcguuggacgcguAGCaGACCGCGugACCg -3'
miRNA:   3'- guUGGUGa--GGGCG------------UCG-CUGGCGC--UGG- -5'
12408 3' -58.6 NC_003324.1 + 14772 0.68 0.441019
Target:  5'- aCGGCUggaaaGCUCagcaggaaaUCGCGGCGAagaaCGCGGCCg -3'
miRNA:   3'- -GUUGG-----UGAG---------GGCGUCGCUg---GCGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.