miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 24404 0.7 0.344857
Target:  5'- gGACCGCguugCCgGCAuggugcGCGuCCGCGACg -3'
miRNA:   3'- gUUGGUGa---GGgCGU------CGCuGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 11845 0.7 0.32138
Target:  5'- --gUCugUCCUGC-GCGACCG-GGCCg -3'
miRNA:   3'- guuGGugAGGGCGuCGCUGGCgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 18349 0.71 0.313825
Target:  5'- uCGGCCGaUUCCGuCAGCGGUCGCGGCUc -3'
miRNA:   3'- -GUUGGUgAGGGC-GUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 30815 0.71 0.313825
Target:  5'- --gUCACUCCCGagcagcaGGCGGCCGaCG-CCa -3'
miRNA:   3'- guuGGUGAGGGCg------UCGCUGGC-GCuGG- -5'
12408 3' -58.6 NC_003324.1 + 31608 0.71 0.29912
Target:  5'- gCGGCCAUUCUCacgacgagGaCGGCgGACUGCGACCa -3'
miRNA:   3'- -GUUGGUGAGGG--------C-GUCG-CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 22304 0.72 0.271323
Target:  5'- -uGCCGCUCCCGaAG-GugCGCGGCg -3'
miRNA:   3'- guUGGUGAGGGCgUCgCugGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 41196 0.72 0.264706
Target:  5'- -uACCGCUCCCaGgAGgGACCGCaugaGCCg -3'
miRNA:   3'- guUGGUGAGGG-CgUCgCUGGCGc---UGG- -5'
12408 3' -58.6 NC_003324.1 + 8951 0.72 0.245641
Target:  5'- uGGCCGCaucUCCCGCGGCuACCGaaaugcucccgaCGGCCg -3'
miRNA:   3'- gUUGGUG---AGGGCGUCGcUGGC------------GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 38073 0.73 0.227728
Target:  5'- gCAACCGCUCCgGCA-UGGCCGCcuaACCc -3'
miRNA:   3'- -GUUGGUGAGGgCGUcGCUGGCGc--UGG- -5'
12408 3' -58.6 NC_003324.1 + 38452 0.78 0.102686
Target:  5'- -cACCACuuccUCCCGCA-CGACgGCGACCa -3'
miRNA:   3'- guUGGUG----AGGGCGUcGCUGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 14657 0.81 0.058891
Target:  5'- cCGGCCGCUUgCGcCGGCaGGCCGCGACCc -3'
miRNA:   3'- -GUUGGUGAGgGC-GUCG-CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 55394 0.66 0.540271
Target:  5'- gAGCCGCUgUgGCAGCuuguuccagcaGCCGCGGCa -3'
miRNA:   3'- gUUGGUGAgGgCGUCGc----------UGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 43007 0.66 0.592723
Target:  5'- aGACCGCcggCGCAGUGACCGCcaauggucGCCc -3'
miRNA:   3'- gUUGGUGaggGCGUCGCUGGCGc-------UGG- -5'
12408 3' -58.6 NC_003324.1 + 9622 0.66 0.58214
Target:  5'- --cCCACUCCgGCuGaccacccaGACC-CGACCa -3'
miRNA:   3'- guuGGUGAGGgCGuCg-------CUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35110 0.66 0.58214
Target:  5'- aGGCCGCUgCUGCcGCcGCCGCuGCUg -3'
miRNA:   3'- gUUGGUGAgGGCGuCGcUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 38422 0.66 0.58214
Target:  5'- -cGCCGC-CCCGguGCccUCGUGAUCg -3'
miRNA:   3'- guUGGUGaGGGCguCGcuGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 3414 0.66 0.561098
Target:  5'- gAGCCACUgCaGuCGGCGACCGUcuucgGGCUg -3'
miRNA:   3'- gUUGGUGAgGgC-GUCGCUGGCG-----CUGG- -5'
12408 3' -58.6 NC_003324.1 + 22346 0.66 0.550654
Target:  5'- aCGACgACaUCaaggCGCAGCucGCCGCGAUCg -3'
miRNA:   3'- -GUUGgUG-AGg---GCGUCGc-UGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 33852 0.66 0.550654
Target:  5'- -cACCAUUUgCCGCGGUGACUGgGAg- -3'
miRNA:   3'- guUGGUGAG-GGCGUCGCUGGCgCUgg -5'
12408 3' -58.6 NC_003324.1 + 42212 0.66 0.550654
Target:  5'- -uGCUGaucCCCGCGGCGGCauugGCGACg -3'
miRNA:   3'- guUGGUga-GGGCGUCGCUGg---CGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.