miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 30170 0.69 0.389267
Target:  5'- uGACCGaaggcgucgaggaagCCGCAGCGGCCggugucGCGACCg -3'
miRNA:   3'- gUUGGUgag------------GGCGUCGCUGG------CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 7865 0.69 0.386655
Target:  5'- -cGCCGCggcggcaaagCCCGUuGCGAUCGCG-CCu -3'
miRNA:   3'- guUGGUGa---------GGGCGuCGCUGGCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 5647 0.69 0.36954
Target:  5'- aGGCCGaugacgCCCGCGGCGAaggUUGCGGCg -3'
miRNA:   3'- gUUGGUga----GGGCGUCGCU---GGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 42005 0.7 0.361179
Target:  5'- gAACgCGguacCUCCggaUGCGGCGACUGCGAUCg -3'
miRNA:   3'- gUUG-GU----GAGG---GCGUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 32229 0.67 0.509545
Target:  5'- aCAAuuCCAagCCCGgGGCGGCC-CGGCCc -3'
miRNA:   3'- -GUU--GGUgaGGGCgUCGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 20568 0.67 0.509545
Target:  5'- uCAAUCGCaacaUCCCGCuccGCGauGCgGCGAUCg -3'
miRNA:   3'- -GUUGGUG----AGGGCGu--CGC--UGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 54140 0.67 0.529954
Target:  5'- uCGGCCgAUUCcgCCGCAGCGAaagccuCUGCGcGCCa -3'
miRNA:   3'- -GUUGG-UGAG--GGCGUCGCU------GGCGC-UGG- -5'
12408 3' -58.6 NC_003324.1 + 9622 0.66 0.58214
Target:  5'- --cCCACUCCgGCuGaccacccaGACC-CGACCa -3'
miRNA:   3'- guuGGUGAGGgCGuCg-------CUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35110 0.66 0.58214
Target:  5'- aGGCCGCUgCUGCcGCcGCCGCuGCUg -3'
miRNA:   3'- gUUGGUGAgGGCGuCGcUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 38422 0.66 0.58214
Target:  5'- -cGCCGC-CCCGguGCccUCGUGAUCg -3'
miRNA:   3'- guUGGUGaGGGCguCGcuGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 3414 0.66 0.561098
Target:  5'- gAGCCACUgCaGuCGGCGACCGUcuucgGGCUg -3'
miRNA:   3'- gUUGGUGAgGgC-GUCGCUGGCG-----CUGG- -5'
12408 3' -58.6 NC_003324.1 + 22346 0.66 0.550654
Target:  5'- aCGACgACaUCaaggCGCAGCucGCCGCGAUCg -3'
miRNA:   3'- -GUUGgUG-AGg---GCGUCGc-UGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 33852 0.66 0.550654
Target:  5'- -cACCAUUUgCCGCGGUGACUGgGAg- -3'
miRNA:   3'- guUGGUGAG-GGCGUCGCUGGCgCUgg -5'
12408 3' -58.6 NC_003324.1 + 42212 0.66 0.550654
Target:  5'- -uGCUGaucCCCGCGGCGGCauugGCGACg -3'
miRNA:   3'- guUGGUga-GGGCGUCGCUGg---CGCUGg -5'
12408 3' -58.6 NC_003324.1 + 49494 0.66 0.540271
Target:  5'- -cGCCGCUgCCGgGcucGcCGAUCGCGAUCg -3'
miRNA:   3'- guUGGUGAgGGCgU---C-GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 25694 0.66 0.540271
Target:  5'- gCAGCCGugCCggcgcaGCAGCGGCCGacaGACUa -3'
miRNA:   3'- -GUUGGUgaGGg-----CGUCGCUGGCg--CUGG- -5'
12408 3' -58.6 NC_003324.1 + 55394 0.66 0.540271
Target:  5'- gAGCCGCUgUgGCAGCuuguuccagcaGCCGCGGCa -3'
miRNA:   3'- gUUGGUGAgGgCGUCGc----------UGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 16252 0.66 0.540271
Target:  5'- gAGCUGCggugCCCGCcucggugccAGCGAUgccuggCGCGGCCc -3'
miRNA:   3'- gUUGGUGa---GGGCG---------UCGCUG------GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 41427 0.67 0.529954
Target:  5'- aAGCCGC-CCC-CAGCG-CCGauuucgaGGCCg -3'
miRNA:   3'- gUUGGUGaGGGcGUCGCuGGCg------CUGG- -5'
12408 3' -58.6 NC_003324.1 + 43334 0.67 0.529954
Target:  5'- -uGCCGCUgCCa-GGCGACCcugcagGCGGCCc -3'
miRNA:   3'- guUGGUGAgGGcgUCGCUGG------CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.