Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12408 | 3' | -58.6 | NC_003324.1 | + | 31608 | 0.71 | 0.29912 |
Target: 5'- gCGGCCAUUCUCacgacgagGaCGGCgGACUGCGACCa -3' miRNA: 3'- -GUUGGUGAGGG--------C-GUCG-CUGGCGCUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 32229 | 0.67 | 0.509545 |
Target: 5'- aCAAuuCCAagCCCGgGGCGGCC-CGGCCc -3' miRNA: 3'- -GUU--GGUgaGGGCgUCGCUGGcGCUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 33852 | 0.66 | 0.550654 |
Target: 5'- -cACCAUUUgCCGCGGUGACUGgGAg- -3' miRNA: 3'- guUGGUGAG-GGCGUCGCUGGCgCUgg -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 35016 | 0.69 | 0.386655 |
Target: 5'- -uGCCGCagCagcaGCAGCGGCgGCGGCa -3' miRNA: 3'- guUGGUGagGg---CGUCGCUGgCGCUGg -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 35110 | 0.66 | 0.58214 |
Target: 5'- aGGCCGCUgCUGCcGCcGCCGCuGCUg -3' miRNA: 3'- gUUGGUGAgGGCGuCGcUGGCGcUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 37829 | 0.68 | 0.441019 |
Target: 5'- uCGGCgA-UCCCGCucaAGCuGCCGCGACUg -3' miRNA: 3'- -GUUGgUgAGGGCG---UCGcUGGCGCUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 37995 | 0.69 | 0.413286 |
Target: 5'- gCGGCCAUg-CCGgAGCGGuuGCGGCg -3' miRNA: 3'- -GUUGGUGagGGCgUCGCUggCGCUGg -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 38073 | 0.73 | 0.227728 |
Target: 5'- gCAACCGCUCCgGCA-UGGCCGCcuaACCc -3' miRNA: 3'- -GUUGGUGAGGgCGUcGCUGGCGc--UGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 38422 | 0.66 | 0.58214 |
Target: 5'- -cGCCGC-CCCGguGCccUCGUGAUCg -3' miRNA: 3'- guUGGUGaGGGCguCGcuGGCGCUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 38452 | 0.78 | 0.102686 |
Target: 5'- -cACCACuuccUCCCGCA-CGACgGCGACCa -3' miRNA: 3'- guUGGUG----AGGGCGUcGCUGgCGCUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 40228 | 0.67 | 0.509545 |
Target: 5'- cCGGCUucggugcugGCUCCCGCu-CGACUGCcGCCu -3' miRNA: 3'- -GUUGG---------UGAGGGCGucGCUGGCGcUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 41196 | 0.72 | 0.264706 |
Target: 5'- -uACCGCUCCCaGgAGgGACCGCaugaGCCg -3' miRNA: 3'- guUGGUGAGGG-CgUCgCUGGCGc---UGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 41427 | 0.67 | 0.529954 |
Target: 5'- aAGCCGC-CCC-CAGCG-CCGauuucgaGGCCg -3' miRNA: 3'- gUUGGUGaGGGcGUCGCuGGCg------CUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 41648 | 0.72 | 0.278072 |
Target: 5'- --cCCGCUCUCGuCGGCGGC-GCGACg -3' miRNA: 3'- guuGGUGAGGGC-GUCGCUGgCGCUGg -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 42005 | 0.7 | 0.361179 |
Target: 5'- gAACgCGguacCUCCggaUGCGGCGACUGCGAUCg -3' miRNA: 3'- gUUG-GU----GAGG---GCGUCGCUGGCGCUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 42212 | 0.66 | 0.550654 |
Target: 5'- -uGCUGaucCCCGCGGCGGCauugGCGACg -3' miRNA: 3'- guUGGUga-GGGCGUCGCUGg---CGCUGg -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 42270 | 0.69 | 0.416922 |
Target: 5'- cCGAUCACUCCgGCgcagugccgucguucGGCaaguacGAUCGCGGCCc -3' miRNA: 3'- -GUUGGUGAGGgCG---------------UCG------CUGGCGCUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 42873 | 0.69 | 0.40339 |
Target: 5'- cCGGCCGg-CCCGCGaggaucuGCGACCGagaaCGACCc -3' miRNA: 3'- -GUUGGUgaGGGCGU-------CGCUGGC----GCUGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 43007 | 0.66 | 0.592723 |
Target: 5'- aGACCGCcggCGCAGUGACCGCcaauggucGCCc -3' miRNA: 3'- gUUGGUGaggGCGUCGCUGGCGc-------UGG- -5' |
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12408 | 3' | -58.6 | NC_003324.1 | + | 43122 | 0.66 | 0.592723 |
Target: 5'- -uGCCAaagUCCCGCAGguugccguccuCGACgGCGAgCu -3' miRNA: 3'- guUGGUg--AGGGCGUC-----------GCUGgCGCUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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