miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 56128 0.67 0.509545
Target:  5'- aAGCCgACggCCGUGGCGACUuugGCGAUCu -3'
miRNA:   3'- gUUGG-UGagGGCGUCGCUGG---CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 55394 0.66 0.540271
Target:  5'- gAGCCGCUgUgGCAGCuuguuccagcaGCCGCGGCa -3'
miRNA:   3'- gUUGGUGAgGgCGUCGc----------UGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 54506 0.67 0.529954
Target:  5'- gCAuCCGCgaagCCUGCAgcGCGACCgGCGuuCCg -3'
miRNA:   3'- -GUuGGUGa---GGGCGU--CGCUGG-CGCu-GG- -5'
12408 3' -58.6 NC_003324.1 + 54407 0.67 0.489473
Target:  5'- aCGGCaACUCCC-CGG-GACCGCuGCCg -3'
miRNA:   3'- -GUUGgUGAGGGcGUCgCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 54140 0.67 0.529954
Target:  5'- uCGGCCgAUUCcgCCGCAGCGAaagccuCUGCGcGCCa -3'
miRNA:   3'- -GUUGG-UGAG--GGCGUCGCU------GGCGC-UGG- -5'
12408 3' -58.6 NC_003324.1 + 49494 0.66 0.540271
Target:  5'- -cGCCGCUgCCGgGcucGcCGAUCGCGAUCg -3'
miRNA:   3'- guUGGUGAgGGCgU---C-GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 49208 0.67 0.499464
Target:  5'- uCAAUCGagcggCCCGCcaucuuGGCGAUCGCGucACCg -3'
miRNA:   3'- -GUUGGUga---GGGCG------UCGCUGGCGC--UGG- -5'
12408 3' -58.6 NC_003324.1 + 49041 0.72 0.251866
Target:  5'- -cACCuCUCCCGCGGCGGCgG-GGCa -3'
miRNA:   3'- guUGGuGAGGGCGUCGCUGgCgCUGg -5'
12408 3' -58.6 NC_003324.1 + 47618 0.7 0.361179
Target:  5'- -uACCACgCCgCGCA-UGACgGCGACCg -3'
miRNA:   3'- guUGGUGaGG-GCGUcGCUGgCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 45992 0.67 0.489473
Target:  5'- --uUCGCUUCCGaAGCGGCgGCG-CCg -3'
miRNA:   3'- guuGGUGAGGGCgUCGCUGgCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 44290 0.66 0.540271
Target:  5'- uCGAUCugUCUcgacgaaccgggCGCGGUGG-CGCGGCCg -3'
miRNA:   3'- -GUUGGugAGG------------GCGUCGCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 43689 0.69 0.395406
Target:  5'- ---gCugUCCgaGCAGuCGAgCGCGACCg -3'
miRNA:   3'- guugGugAGGg-CGUC-GCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 43334 0.67 0.529954
Target:  5'- -uGCCGCUgCCa-GGCGACCcugcagGCGGCCc -3'
miRNA:   3'- guUGGUGAgGGcgUCGCUGG------CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 43122 0.66 0.592723
Target:  5'- -uGCCAaagUCCCGCAGguugccguccuCGACgGCGAgCu -3'
miRNA:   3'- guUGGUg--AGGGCGUC-----------GCUGgCGCUgG- -5'
12408 3' -58.6 NC_003324.1 + 43007 0.66 0.592723
Target:  5'- aGACCGCcggCGCAGUGACCGCcaauggucGCCc -3'
miRNA:   3'- gUUGGUGaggGCGUCGCUGGCGc-------UGG- -5'
12408 3' -58.6 NC_003324.1 + 42873 0.69 0.40339
Target:  5'- cCGGCCGg-CCCGCGaggaucuGCGACCGagaaCGACCc -3'
miRNA:   3'- -GUUGGUgaGGGCGU-------CGCUGGC----GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 42270 0.69 0.416922
Target:  5'- cCGAUCACUCCgGCgcagugccgucguucGGCaaguacGAUCGCGGCCc -3'
miRNA:   3'- -GUUGGUGAGGgCG---------------UCG------CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 42212 0.66 0.550654
Target:  5'- -uGCUGaucCCCGCGGCGGCauugGCGACg -3'
miRNA:   3'- guUGGUga-GGGCGUCGCUGg---CGCUGg -5'
12408 3' -58.6 NC_003324.1 + 42005 0.7 0.361179
Target:  5'- gAACgCGguacCUCCggaUGCGGCGACUGCGAUCg -3'
miRNA:   3'- gUUG-GU----GAGG---GCGUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 41648 0.72 0.278072
Target:  5'- --cCCGCUCUCGuCGGCGGC-GCGACg -3'
miRNA:   3'- guuGGUGAGGGC-GUCGCUGgCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.