miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 2264 1.1 0.00044
Target:  5'- aCAACCACUCCCGCAGCGACCGCGACCc -3'
miRNA:   3'- -GUUGGUGAGGGCGUCGCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 2497 0.66 0.571596
Target:  5'- ---gCACUCCgaGCGGCGacagauaguaaGCCGUGACg -3'
miRNA:   3'- guugGUGAGGg-CGUCGC-----------UGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 3414 0.66 0.561098
Target:  5'- gAGCCACUgCaGuCGGCGACCGUcuucgGGCUg -3'
miRNA:   3'- gUUGGUGAgGgC-GUCGCUGGCG-----CUGG- -5'
12408 3' -58.6 NC_003324.1 + 4487 0.67 0.499464
Target:  5'- gCGGCuCACaUCCUcuacgGCGGCGA-CGCGACUa -3'
miRNA:   3'- -GUUG-GUG-AGGG-----CGUCGCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 5211 0.69 0.413286
Target:  5'- -uAUCGCUggCGCGGCGACCGCaauCCg -3'
miRNA:   3'- guUGGUGAggGCGUCGCUGGCGcu-GG- -5'
12408 3' -58.6 NC_003324.1 + 5563 0.67 0.499464
Target:  5'- gCAACC-UUCgCCGCGGgcgucaucggccUGACCGUGAUCg -3'
miRNA:   3'- -GUUGGuGAG-GGCGUC------------GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 5647 0.69 0.36954
Target:  5'- aGGCCGaugacgCCCGCGGCGAaggUUGCGGCg -3'
miRNA:   3'- gUUGGUga----GGGCGUCGCU---GGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 6163 0.68 0.450496
Target:  5'- gGACCgACUugCCCuCGGCGAUCuCGACCa -3'
miRNA:   3'- gUUGG-UGA--GGGcGUCGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 6166 0.66 0.565291
Target:  5'- aAugCGCUgCCCgacgacaugcgagagGCAGCccuuGCUGCGACCg -3'
miRNA:   3'- gUugGUGA-GGG---------------CGUCGc---UGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 7865 0.69 0.386655
Target:  5'- -cGCCGCggcggcaaagCCCGUuGCGAUCGCG-CCu -3'
miRNA:   3'- guUGGUGa---------GGGCGuCGCUGGCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 8176 0.67 0.479576
Target:  5'- gGGCCAgUCCCuGCucacugcccGGCGGCgCGCG-CCu -3'
miRNA:   3'- gUUGGUgAGGG-CG---------UCGCUG-GCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 8951 0.72 0.245641
Target:  5'- uGGCCGCaucUCCCGCGGCuACCGaaaugcucccgaCGGCCg -3'
miRNA:   3'- gUUGGUG---AGGGCGUCGcUGGC------------GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 9622 0.66 0.58214
Target:  5'- --cCCACUCCgGCuGaccacccaGACC-CGACCa -3'
miRNA:   3'- guuGGUGAGGgCGuCg-------CUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 11580 0.72 0.271323
Target:  5'- -uGCUGCUCCCGCGGCuccuGCCGgaGACUg -3'
miRNA:   3'- guUGGUGAGGGCGUCGc---UGGCg-CUGG- -5'
12408 3' -58.6 NC_003324.1 + 11845 0.7 0.32138
Target:  5'- --gUCugUCCUGC-GCGACCG-GGCCg -3'
miRNA:   3'- guuGGugAGGGCGuCGCUGGCgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 12590 0.68 0.441019
Target:  5'- -uGCCACcagCCCGUcguuggacgcguAGCaGACCGCGugACCg -3'
miRNA:   3'- guUGGUGa--GGGCG------------UCG-CUGGCGC--UGG- -5'
12408 3' -58.6 NC_003324.1 + 13073 0.66 0.571596
Target:  5'- gCAGCCGgUaccgCCGCcGcCGACCGCcGCCg -3'
miRNA:   3'- -GUUGGUgAg---GGCGuC-GCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 14657 0.81 0.058891
Target:  5'- cCGGCCGCUUgCGcCGGCaGGCCGCGACCc -3'
miRNA:   3'- -GUUGGUGAGgGC-GUCG-CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 14772 0.68 0.441019
Target:  5'- aCGGCUggaaaGCUCagcaggaaaUCGCGGCGAagaaCGCGGCCg -3'
miRNA:   3'- -GUUGG-----UGAG---------GGCGUCGCUg---GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 16133 0.67 0.479576
Target:  5'- aGGgCGCUUCgGUAGCGgggGCCGCG-CCa -3'
miRNA:   3'- gUUgGUGAGGgCGUCGC---UGGCGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.