miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 24404 0.7 0.344857
Target:  5'- gGACCGCguugCCgGCAuggugcGCGuCCGCGACg -3'
miRNA:   3'- gUUGGUGa---GGgCGU------CGCuGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 5647 0.69 0.36954
Target:  5'- aGGCCGaugacgCCCGCGGCGAaggUUGCGGCg -3'
miRNA:   3'- gUUGGUga----GGGCGUCGCU---GGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 42270 0.69 0.416922
Target:  5'- cCGAUCACUCCgGCgcagugccgucguucGGCaaguacGAUCGCGGCCc -3'
miRNA:   3'- -GUUGGUGAGGgCG---------------UCG------CUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 26265 0.69 0.404283
Target:  5'- aGACgcaGC-CCCGCAGCGAgaCCGcCGACa -3'
miRNA:   3'- gUUGg--UGaGGGCGUCGCU--GGC-GCUGg -5'
12408 3' -58.6 NC_003324.1 + 43689 0.69 0.395406
Target:  5'- ---gCugUCCgaGCAGuCGAgCGCGACCg -3'
miRNA:   3'- guugGugAGGg-CGUC-GCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 30170 0.69 0.389267
Target:  5'- uGACCGaaggcgucgaggaagCCGCAGCGGCCggugucGCGACCg -3'
miRNA:   3'- gUUGGUgag------------GGCGUCGCUGG------CGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 7865 0.69 0.386655
Target:  5'- -cGCCGCggcggcaaagCCCGUuGCGAUCGCG-CCu -3'
miRNA:   3'- guUGGUGa---------GGGCGuCGCUGGCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 37995 0.69 0.413286
Target:  5'- gCGGCCAUg-CCGgAGCGGuuGCGGCg -3'
miRNA:   3'- -GUUGGUGagGGCgUCGCUggCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 5211 0.69 0.413286
Target:  5'- -uAUCGCUggCGCGGCGACCGCaauCCg -3'
miRNA:   3'- guUGGUGAggGCGUCGCUGGCGcu-GG- -5'
12408 3' -58.6 NC_003324.1 + 42873 0.69 0.40339
Target:  5'- cCGGCCGg-CCCGCGaggaucuGCGACCGagaaCGACCc -3'
miRNA:   3'- -GUUGGUgaGGGCGU-------CGCUGGC----GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35016 0.69 0.386655
Target:  5'- -uGCCGCagCagcaGCAGCGGCgGCGGCa -3'
miRNA:   3'- guUGGUGagGg---CGUCGCUGgCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 21853 0.68 0.450496
Target:  5'- gCAGCCGggcCUCCU-CGGCGGCCuuGGCCu -3'
miRNA:   3'- -GUUGGU---GAGGGcGUCGCUGGcgCUGG- -5'
12408 3' -58.6 NC_003324.1 + 6163 0.68 0.450496
Target:  5'- gGACCgACUugCCCuCGGCGAUCuCGACCa -3'
miRNA:   3'- gUUGG-UGA--GGGcGUCGCUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 12590 0.68 0.441019
Target:  5'- -uGCCACcagCCCGUcguuggacgcguAGCaGACCGCGugACCg -3'
miRNA:   3'- guUGGUGa--GGGCG------------UCG-CUGGCGC--UGG- -5'
12408 3' -58.6 NC_003324.1 + 37829 0.68 0.441019
Target:  5'- uCGGCgA-UCCCGCucaAGCuGCCGCGACUg -3'
miRNA:   3'- -GUUGgUgAGGGCG---UCGcUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 20418 0.68 0.422411
Target:  5'- gAACCgGCUUCUGuCGGCGAUgGCGAaCCc -3'
miRNA:   3'- gUUGG-UGAGGGC-GUCGCUGgCGCU-GG- -5'
12408 3' -58.6 NC_003324.1 + 14772 0.68 0.441019
Target:  5'- aCGGCUggaaaGCUCagcaggaaaUCGCGGCGAagaaCGCGGCCg -3'
miRNA:   3'- -GUUGG-----UGAG---------GGCGUCGCUg---GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 54140 0.67 0.529954
Target:  5'- uCGGCCgAUUCcgCCGCAGCGAaagccuCUGCGcGCCa -3'
miRNA:   3'- -GUUGG-UGAG--GGCGUCGCU------GGCGC-UGG- -5'
12408 3' -58.6 NC_003324.1 + 16133 0.67 0.479576
Target:  5'- aGGgCGCUUCgGUAGCGgggGCCGCG-CCa -3'
miRNA:   3'- gUUgGUGAGGgCGUCGC---UGGCGCuGG- -5'
12408 3' -58.6 NC_003324.1 + 45992 0.67 0.489473
Target:  5'- --uUCGCUUCCGaAGCGGCgGCG-CCg -3'
miRNA:   3'- guuGGUGAGGGCgUCGCUGgCGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.