miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12414 5' -52.3 NC_003324.1 + 4529 1.11 0.001717
Target:  5'- uCGAUCGACGCCACCGACAAGAUGAGCc -3'
miRNA:   3'- -GCUAGCUGCGGUGGCUGUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 22032 0.82 0.154009
Target:  5'- -cAUCG-CGCCGCCGACGAGAUG-GCc -3'
miRNA:   3'- gcUAGCuGCGGUGGCUGUUCUACuCG- -5'
12414 5' -52.3 NC_003324.1 + 41727 0.82 0.167284
Target:  5'- -cGUCG-CGCCGCCGACGAGAgcGGGCg -3'
miRNA:   3'- gcUAGCuGCGGUGGCUGUUCUa-CUCG- -5'
12414 5' -52.3 NC_003324.1 + 30238 0.75 0.427603
Target:  5'- cCGAgCGACGCCACCGcCGAcaccaucggcGAUGAuGCg -3'
miRNA:   3'- -GCUaGCUGCGGUGGCuGUU----------CUACU-CG- -5'
12414 5' -52.3 NC_003324.1 + 37649 0.74 0.477223
Target:  5'- uGAUCGACGCCcucACgGGCAAGGUcacaGAGg -3'
miRNA:   3'- gCUAGCUGCGG---UGgCUGUUCUA----CUCg -5'
12414 5' -52.3 NC_003324.1 + 20625 0.73 0.508323
Target:  5'- cCGAUcCGACuGUUGCCGGCGcuGAUGGGCg -3'
miRNA:   3'- -GCUA-GCUG-CGGUGGCUGUu-CUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 55495 0.73 0.518881
Target:  5'- ---aCGACGCCACUGuuCAAGgcGGGCu -3'
miRNA:   3'- gcuaGCUGCGGUGGCu-GUUCuaCUCG- -5'
12414 5' -52.3 NC_003324.1 + 46045 0.72 0.551043
Target:  5'- uGAUCGucgaAgGCCACuUGcCGAGAUGAGCg -3'
miRNA:   3'- gCUAGC----UgCGGUG-GCuGUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 29071 0.72 0.560814
Target:  5'- gCGAaaUCGACGCUGCCgGugAAGAUgcauucggucaacGAGCg -3'
miRNA:   3'- -GCU--AGCUGCGGUGG-CugUUCUA-------------CUCG- -5'
12414 5' -52.3 NC_003324.1 + 8282 0.72 0.560814
Target:  5'- uGGUCGaagugccaggcgcGCGCCGCCGGgCA--GUGAGCa -3'
miRNA:   3'- gCUAGC-------------UGCGGUGGCU-GUucUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 30895 0.72 0.561903
Target:  5'- ---cCGACGCCAUCGACcguuGGGcacUGGGCg -3'
miRNA:   3'- gcuaGCUGCGGUGGCUGu---UCU---ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 30443 0.72 0.561903
Target:  5'- cCGAgggCGACGCCAucaaggcuCUGACGgaGGAUGcAGCa -3'
miRNA:   3'- -GCUa--GCUGCGGU--------GGCUGU--UCUAC-UCG- -5'
12414 5' -52.3 NC_003324.1 + 26682 0.72 0.561903
Target:  5'- gGAUCGAUGCCGCUGu-----UGAGCg -3'
miRNA:   3'- gCUAGCUGCGGUGGCuguucuACUCG- -5'
12414 5' -52.3 NC_003324.1 + 27884 0.72 0.583787
Target:  5'- gGGcUCGGCGCCAucaguCCGACGAcguUGGGCg -3'
miRNA:   3'- gCU-AGCUGCGGU-----GGCUGUUcu-ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 49217 0.72 0.594794
Target:  5'- aCGAUcCGaACGCCugCGACGccauGAUcGGGCa -3'
miRNA:   3'- -GCUA-GC-UGCGGugGCUGUu---CUA-CUCG- -5'
12414 5' -52.3 NC_003324.1 + 49652 0.71 0.639052
Target:  5'- uCGA-CGACGCUGCCGAUAucaaGGGCg -3'
miRNA:   3'- -GCUaGCUGCGGUGGCUGUucuaCUCG- -5'
12414 5' -52.3 NC_003324.1 + 17551 0.7 0.661181
Target:  5'- aCGcUCGGCGCgA-CGGCAGGAcuuggUGAGCa -3'
miRNA:   3'- -GCuAGCUGCGgUgGCUGUUCU-----ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 18143 0.7 0.661181
Target:  5'- --uUCGACGCCgguuucgccgacACCGGCAAGGUcguGGCu -3'
miRNA:   3'- gcuAGCUGCGG------------UGGCUGUUCUAc--UCG- -5'
12414 5' -52.3 NC_003324.1 + 23355 0.7 0.67221
Target:  5'- uGA-CGGCGCgCAUCugagccuuccgGGCAAGGUGGGCg -3'
miRNA:   3'- gCUaGCUGCG-GUGG-----------CUGUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 30477 0.7 0.694142
Target:  5'- uCGaAUCGGCGCCGCCGAgCAGGcccucgGAaacuGCg -3'
miRNA:   3'- -GC-UAGCUGCGGUGGCU-GUUCua----CU----CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.